RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DNASE2O00115 360 aaPredicted RBP13.3□□□□□ -0.28
CUX1-211ENST00000546411 MGST3O14880 152 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 NPY1RP25929 384 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 TNFRSF9Q07011 255 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 P2RY6Q15077 328 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 KHDC3LQ587J8 217 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 ABHD12Q8N2K0 398 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 TIMD4Q96H15 378 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 HARBI1Q96MB7 349 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 ONECUT1Q9UBC0 465 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 TRAPPC1Q9Y5R8 145 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 XKRY2A2RUG3 117 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 C16orf97H3BN30 126 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 TRGC2P03986 189 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 CTRB1P17538 263 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 CD1BP29016 333 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 CHRNB4P30926 498 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 PSG5Q15238 335 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 HFEQ30201 348 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 C9orf152Q5JTZ5 239 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 CTRB2Q6GPI1 263 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 HS3ST6Q96QI5 342 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 UCP1P25874 307 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 THBS3P49746 956 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 H1FOOQ8IZA3 346 aaPredicted RBP13.29□□□□□ -0.28
CUX1-211ENST00000546411 BORCS7Q96B45 105 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 WDYHV1Q96HA8 205 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 NAT8Q9UHE5 227 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 RHOBP62745 196 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 RNF166Q96A37 237 aaPredicted RBP13.29□□□□□ -0.28
CUX1-211ENST00000546411 CD59P13987 128 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 HOXA6P31267 233 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 FAM27E3Q08E93 113 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 HABP2Q14520 560 aaPredicted RBP13.29□□□□□ -0.28
CUX1-211ENST00000546411 HIST3H3Q16695 136 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 ZNF645Q8N7E2 425 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 UNC80Q8N2C7 3258 aa13.29□□□□□ -0.28
CUX1-211ENST00000546411 CTXND1A0A1B0GTU2 59 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 J3QR06 171 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 SCGB2A1O75556 95 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 C9orf106Q8NAJ2 232 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 OR5B3Q8NH48 314 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 GAL3ST2Q9H3Q3 398 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 IFT22Q9H7X7 185 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 MIOXQ9UGB7 285 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 TRAV24A0A0B4J272 114 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 AHRRA9YTQ3 701 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 PPIHO43447 177 aaKnown RBP13.28□□□□□ -0.28
CUX1-211ENST00000546411 NTF4P34130 210 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 WNT5AP41221 380 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 RPL39P5Q59GN2 51 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 DBX2Q6ZNG2 339 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 GLRX5Q86SX6 157 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 OR2T10Q8NGZ9 312 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 RAB24Q969Q5 203 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 RAB4AP20338 218 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 GFRA1P56159 465 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 PNRC1Q12796 327 aaPredicted RBP13.28□□□□□ -0.28
CUX1-211ENST00000546411 VMA21Q3ZAQ7 101 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 ZBTB34Q8NCN2 500 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 TMEM18Q96B42 140 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 REG4Q9BYZ8 158 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 SPRR3Q9UBC9 169 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 FUT9Q9Y231 359 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 FAM208BQ5VWN6 2430 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 C17orf98A8MV24 154 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 ATXN7O15265 892 aaPredicted RBP13.28□□□□□ -0.28
CUX1-211ENST00000546411 RBP4P02753 201 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 SERF2P84101 59 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 MIC13Q5XKP0 118 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 ZCCHC24Q8N2G6 241 aaKnown RBP13.28□□□□□ -0.28
CUX1-211ENST00000546411 OR13A1Q8NGR1 328 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 RPEQ96AT9 228 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 BTF3L4Q96K17 158 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 TMEM56Q96MV1 263 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 SH2D2AQ9NP31 389 aa13.28□□□□□ -0.28
CUX1-211ENST00000546411 MMP7P09237 267 aaPredicted RBP13.27□□□□□ -0.28
CUX1-211ENST00000546411 B3GALT5-AS1P59052 145 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 PMS2P11Q13670 270 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 CSRP2Q16527 193 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 HIST1H2BAQ96A08 127 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 WFDC1Q9HC57 220 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 CLCF1Q9UBD9 225 aa13.27□□□□□ -0.28
CUX1-211ENST00000546411 NCBP2LA6PVI3 153 aaKnown RBP13.27□□□□□ -0.29
CUX1-211ENST00000546411 ZNF883P0CG24 379 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 MEF2BQ02080 365 aaPredicted RBP13.27□□□□□ -0.29
CUX1-211ENST00000546411 C1orf147Q96MC9 270 aaPredicted RBP13.27□□□□□ -0.29
CUX1-211ENST00000546411 TGIF2-C20orf24A0A0A6YYL0 155 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 KIAA1324LA8MWY0 1029 aaPredicted RBP13.27□□□□□ -0.29
CUX1-211ENST00000546411 NDUFB4O95168 129 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 CD82P27701 267 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 SLC35B1P78383 322 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 FAM216AQ8WUB2 273 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 SMIM8Q96KF7 97 aa13.27□□□□□ -0.29
CUX1-211ENST00000546411 WIPF3A6NGB9 483 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 ANOS1P23352 680 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 OTX1P32242 354 aaPredicted RBP13.26□□□□□ -0.29
CUX1-211ENST00000546411 FAM3BP58499 235 aaPredicted RBP13.26□□□□□ -0.29
CUX1-211ENST00000546411 TNXAQ16473 311 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 SPNS3Q6ZMD2 512 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms