RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 A0A0U1RQK1 487 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 KLRC4-KLRK1H3BQV0 150 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 CLDN34H7C241 214 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 NKX2-8O15522 239 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 GZMHP20718 246 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 CHRNA7P36544 502 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 ZNF766Q5HY98 468 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 FAM201AQ5SY85 155 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 OR13A1Q8NGR1 328 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 DUSP13Q9UII6 198 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 ACACAQ13085 2346 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 DUXBA0A1W2PPF3 345 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 COX5BP10606 129 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 HOXA6P31267 233 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 EDDM3BP56851 147 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 FAM3BP58499 235 aaPredicted RBP12.6□□□□□ -0.39
USP28-214ENST00000545540 TGFBR3Q03167 851 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 HES3Q5TGS1 186 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 KDF1Q8NAX2 398 aaPredicted RBP12.6□□□□□ -0.39
USP28-214ENST00000545540 OR10G4Q8NGN3 311 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 OR10G9Q8NGN4 311 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 OR10G7Q8NGN6 311 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 IL22RA2Q969J5 263 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 TCEAL7Q9BRU2 100 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 PCGF1Q9BSM1 259 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 DERL1Q9BUN8 251 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 KCNIP1Q9NZI2 227 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 TNRC6BQ9UPQ9 1833 aaKnown RBP12.6□□□□□ -0.39
USP28-214ENST00000545540 FOXF2Q12947 444 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 VHLLQ6RSH7 139 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 C1orf87Q8N0U7 546 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 COQ2Q96H96 371 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 RAC2P15153 192 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 P2RY6Q15077 328 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 TMEM41BQ5BJD5 291 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 HIST3H2BBQ8N257 126 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 NINJ1Q92982 152 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 CISD1Q9NZ45 108 aaKnown RBP12.6□□□□□ -0.39
USP28-214ENST00000545540 VAX2Q9UIW0 290 aa12.6□□□□□ -0.39
USP28-214ENST00000545540 A0A1B0GUS0 222 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 SPRNQ5BIV9 151 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 NCR3LG1Q68D85 454 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 TIMM8AO60220 97 aaPredicted RBP12.59□□□□□ -0.39
USP28-214ENST00000545540 CST9LP1Q5W188 147 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 LRP11Q86VZ4 500 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 C1QL4Q86Z23 238 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 RAB24Q969Q5 203 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 CD46P15529 392 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 ERVK11-1P61568 191 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 MEF2BQ02080 365 aaPredicted RBP12.59□□□□□ -0.39
USP28-214ENST00000545540 COL10A1Q03692 680 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 SRSF7Q16629 238 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP28-214ENST00000545540 DTD1Q8TEA8 209 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 LSM10Q969L4 123 aaKnown RBP12.59□□□□□ -0.39
USP28-214ENST00000545540 PKIBQ9C010 78 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 SMDT1Q9H4I9 107 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 WASF3Q9UPY6 502 aa12.59□□□□□ -0.39
USP28-214ENST00000545540 YLPM1P49750 1951 aaKnown RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 SELLP14151 372 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 PEAR1Q5VY43 1037 aaPredicted RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 OR4X1Q8NH49 305 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 QTRT1Q9BXR0 403 aaKnown RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 PARLQ9H300 379 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 POLDIP2Q9Y2S7 368 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 KLF13Q9Y2Y9 288 aaPredicted RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 HCFC1P51610 2035 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 A0A087WWC5 75 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 CDX4O14627 284 aaPredicted RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 CYB5R3P00387 301 aaPredicted RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 OPN1MWP04001 364 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 OPN1MW2P0DN77 364 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 OPN1MW3P0DN78 364 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 CD59P13987 128 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 H2BFWTQ7Z2G1 175 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 SEC14L6B5MCN3 397 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 FCGR3BO75015 233 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 C11orf53Q8IXP5 236 aa12.58□□□□□ -0.4
USP28-214ENST00000545540 NANOS1Q8WY41 292 aaKnown RBP12.58□□□□□ -0.4
USP28-214ENST00000545540 TRAV3A0A0B4J244 114 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 LRRC30A6NM36 301 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 RPL39P5Q59GN2 51 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 MRGPRGQ86SM5 289 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 MDS2Q8NDY4 140 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 OR10P1Q8NGE3 313 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 PHOX2AO14813 284 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 HOXB1P14653 301 aaPredicted RBP12.57□□□□□ -0.4
USP28-214ENST00000545540 MYOD1P15172 320 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 MAS1LP35410 378 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 RPL23P62829 140 aaKnown RBP12.57□□□□□ -0.4
USP28-214ENST00000545540 TMEM241Q24JQ0 296 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 ZNRF1Q8ND25 227 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 MBD3L1Q8WWY6 194 aa12.57□□□□□ -0.4
USP28-214ENST00000545540 PACRGQ96M98 296 aaPredicted RBP12.57□□□□□ -0.4
USP28-214ENST00000545540 TRBV6-6A0A0A6YYG2 114 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 ATP5G3P48201 142 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 BSXQ3C1V8 233 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 ZNF645Q8N7E2 425 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 OR8G5Q8NG78 346 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 MEGF10Q96KG7 1140 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 MBNL3Q9NUK0 354 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms