RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 OR13A1Q8NGR1 328 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 SDSLQ96GA7 329 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 LINC00574Q9H8X3 128 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 MSL2Q9HCI7 577 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 MYO15AQ9UKN7 3530 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 IGKV1D-17A0A075B6S4 117 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 C9JQL5 133 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 M0R1B8 84 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 HPRT1P00492 218 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 HOXA5P20719 270 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 DDTP30046 118 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 CEBPDP49716 269 aaPredicted RBP8.23□□□□□ -1.09
SS18-205ENST00000542420 VWC2Q2TAL6 325 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 PRR18Q8N4B5 295 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 OR10A7Q8NGE5 316 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 OR52L2PQ8NGH6 319 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 MRGPRDQ8TDS7 321 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 P2RX4Q99571 388 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 AGMATQ9BSE5 352 aa8.23□□□□□ -1.09
SS18-205ENST00000542420 IFNA10P01566 189 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 CGB3P0DN86 165 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 CGB7P0DN87 165 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 OMGP23515 440 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 GLIPR1P48060 266 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 ZNF83P51522 516 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 RPP30P78346 268 aaKnown RBP8.22□□□□□ -1.09
SS18-205ENST00000542420 SLC25A24Q6NUK1 477 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 C5orf30Q96GV9 206 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 ADTRPQ96IZ2 230 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 GPHA2Q96T91 129 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 TMEM147Q9BVK8 224 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 WDR61Q9GZS3 305 aaKnown RBP8.22□□□□□ -1.09
SS18-205ENST00000542420 PARP12Q9H0J9 701 aaKnown RBP8.22□□□□□ -1.09
SS18-205ENST00000542420 RNF7Q9UBF6 113 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 ARID1AO14497 2285 aa8.22□□□□□ -1.09
SS18-205ENST00000542420 A0A087WWC5 75 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 TRAV39A0A0B4J263 110 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 PRRG2O14669 202 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 AGPAT2O15120 278 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 KLK10O43240 276 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 ZNF16P17020 682 aaPredicted RBP8.21□□□□□ -1.09
SS18-205ENST00000542420 RAB5AP20339 215 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 PPP1CCP36873 323 aaKnown RBP8.21□□□□□ -1.09
SS18-205ENST00000542420 ID4P47928 161 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 TDGF1P3P51864 188 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 GNB2P62879 340 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 MORN2Q502X0 79 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 TMEM41BQ5BJD5 291 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 DNLZQ5SXM8 178 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 CORO2AQ92828 525 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 OR2V2Q96R30 315 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 RBKSQ9H477 322 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 JKAMPQ9P055 326 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 ZNF835Q9Y2P0 537 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 CUL9Q8IWT3 2517 aa8.21□□□□□ -1.09
SS18-205ENST00000542420 WDFY3Q8IZQ1 3526 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 IFNA1P01562 189 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 EGR1P18146 543 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 DUTP33316 252 aaKnown RBP8.21□□□□□ -1.1
SS18-205ENST00000542420 NUTF2P61970 127 aaKnown RBP8.21□□□□□ -1.1
SS18-205ENST00000542420 RPL30P62888 115 aaKnown RBP8.21□□□□□ -1.1
SS18-205ENST00000542420 SLC38A11Q08AI6 406 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 SOHLH1Q5JUK2 328 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 TEX36Q5VZQ5 186 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 H2BFWTQ7Z2G1 175 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 TMEM217Q8N7C4 229 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 GFOD1Q9NXC2 390 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 CISD1Q9NZ45 108 aaKnown RBP8.21□□□□□ -1.1
SS18-205ENST00000542420 CBY1Q9Y3M2 126 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 SPEGQ15772 3267 aa8.21□□□□□ -1.1
SS18-205ENST00000542420 hCG_1809904A0A1W2PP81 198 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 A0A1W2PR64 198 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 A0A1W2PRV1 198 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 B4DEV8 164 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 C1QL1O75973 258 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 YIF1AO95070 293 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 SRP19P09132 144 aaKnown RBP8.2□□□□□ -1.1
SS18-205ENST00000542420 CD40P25942 277 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 AKR1C3P42330 323 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 GPR12P47775 334 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 CDX1P47902 265 aaPredicted RBP8.2□□□□□ -1.1
SS18-205ENST00000542420 FHITP49789 147 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 MSMPQ1L6U9 139 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 STUMQ69YW2 141 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 TMEM108Q6UXF1 575 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 HAPLN4Q86UW8 402 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 THNSL2Q86YJ6 484 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 CLDND2Q8NHS1 167 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 SPOCK3Q9BQ16 436 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 METRNQ9UJH8 293 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 A0A087X0M5 115 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 LOC102723971A0A1B0GUV8 181 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 A0A1B0GX30 115 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 A0A1W2PPH5 198 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 PMS2P5A8MQ11 134 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 C17orf98A8MV24 154 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 S1PR2O95136 353 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 LOXL3P58215 753 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 BRWD1-AS2P59051 145 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 BPIFB3P59826 476 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms