RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 RAB40CQ96S21 281 aa11.37□□□□□ -0.59
PTPN1-202ENST00000541713 ZPBPQ9BS86 351 aa11.37□□□□□ -0.59
PTPN1-202ENST00000541713 IGHV3-48P01763 117 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 CECR9P0C854 216 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 AGAP20933 346 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 FAM3BP58499 235 aaPredicted RBP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 PRSS8Q16651 343 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 NCR3LG1Q68D85 454 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 ZNF497Q6ZNH5 498 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 ABHD12Q8N2K0 398 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TMEM178AQ8NBL3 297 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 FRZBQ92765 325 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 SNRNP40Q96DI7 357 aaKnown RBP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 FAM210BQ96KR6 192 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 HEYLQ9NQ87 328 aaPredicted RBP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 C1QTNF9BB2RNN3 333 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 OR10G4Q8NGN3 311 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 OR10G9Q8NGN4 311 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 OR10G7Q8NGN6 311 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 DDA1Q9BW61 102 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TRAV3A0A0B4J244 114 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 HSPB1P04792 205 aaKnown RBP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 IFNA4P05014 189 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TNFRSF9Q07011 255 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 HEPN1Q6WQI6 88 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 FAM214BQ7L5A3 538 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TGIF2LYQ8IUE0 185 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 DTD1Q8TEA8 209 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TAF15Q92804 592 aaKnown RBP eCLIP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 SPRY4Q9C004 299 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TOLLIPQ9H0E2 274 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 RIMS4Q9H426 269 aaPredicted RBP11.36□□□□□ -0.59
PTPN1-202ENST00000541713 C11orf1Q9H5F2 150 aa11.36□□□□□ -0.59
PTPN1-202ENST00000541713 TMEM30CPA0ZSE6 113 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 C21orf140B9A014 251 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 ACTL6BO94805 426 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 BCL2P10415 239 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 EIF2S3P41091 472 aaKnown RBP11.35□□□□□ -0.59
PTPN1-202ENST00000541713 TNFSF10P50591 281 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 PRR31Q5SQ13 230 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 MOGAT3Q86VF5 341 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 COMMD1Q8N668 190 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 MDS2Q8NDY4 140 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 COQ2Q96H96 371 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 QTRT1Q9BXR0 403 aaKnown RBP11.35□□□□□ -0.59
PTPN1-202ENST00000541713 SPINK4O60575 86 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 TRGC1P0CF51 173 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 PRAMEF5Q5TYX0 476 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 PFDN5Q99471 154 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 SPTBN4Q9H254 2564 aa11.35□□□□□ -0.59
PTPN1-202ENST00000541713 C19orf67A6NJJ6 358 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 OR10P1Q8NGE3 313 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 DCAF16Q9NXF7 216 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BKO60814 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BJP06899 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 SOD3P08294 240 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BOP23527 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BBP33778 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BDP58876 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BCP62807 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 GABRA6Q16445 453 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST2H2BEQ16778 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 FAM209BQ5JX69 171 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.34□□□□□ -0.59
PTPN1-202ENST00000541713 ZNF383Q8NA42 475 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BHQ93079 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BNQ99877 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HIST1H2BMQ99879 126 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 DERL1Q9BUN8 251 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 LOC102723971A0A1B0GUV8 181 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 ZNF705GA8MUZ8 300 aaPredicted RBP11.34□□□□□ -0.59
PTPN1-202ENST00000541713 HBE1P02100 147 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 GPR12P47775 334 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 GGACTQ9BVM4 153 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 WDR61Q9GZS3 305 aaKnown RBP11.34□□□□□ -0.59
PTPN1-202ENST00000541713 UNKLQ9H9P5 680 aaKnown RBP11.34□□□□□ -0.59
PTPN1-202ENST00000541713 GFOD1Q9NXC2 390 aa11.34□□□□□ -0.59
PTPN1-202ENST00000541713 TMEM265A0A087WTH1 108 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 APELAP0DMC3 54 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 SLC25A6P12236 298 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 SAXO1Q8IYX7 474 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 TANC2Q9HCD6 1990 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A10PA6NDY2 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A18PA6NE21 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A16PA6NEW6 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A20PA6NIJ5 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A8PA6NJQ4 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A7PA6NKC0 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A22PA8MWA6 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A12PA8MX19 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A5PA8MXJ8 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A23PA8MXZ1 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 PPP1R2P9O14990 202 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A15PP0C7V4 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A13PP0C7W8 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A14PP0C7W9 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A24PP0C7X0 464 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 FAM90A2PQ658T7 463 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 RND1Q92730 232 aa11.33□□□□□ -0.6
PTPN1-202ENST00000541713 RAB24Q969Q5 203 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms