RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SFTPA1Q8IWL2 248 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 INSIG2Q9Y5U4 225 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 NALCNQ8IZF0 1738 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 FAM181BA6NEQ2 426 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE12JA6NER3 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 K7ESM1 405 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE7O76087 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE12FP0CL80 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE12GP0CL81 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE12IP0CL82 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GAGE4Q13068 117 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 TBR1Q16650 682 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 MRGPRX3Q96LB0 322 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 PRELID3AQ96N28 172 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 DNAJC25-GNG10A0A024R161 153 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 PSG9Q00887 426 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 ZNF562Q6V9R5 426 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 C1orf122Q6ZSJ8 110 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 OR5AN1Q8NGI8 311 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 DLX4Q92988 240 aaPredicted RBP7.57□□□□□ -1.2
YBX3-208ENST00000540447 MRGPRX1Q96LB2 322 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 FOXQ1Q9C009 403 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 PRNDQ9UKY0 176 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 SCO2A0A1W2PP80 73 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 KLKB1P03952 638 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 GABRG2P18507 467 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 OR2Z1Q8NG97 314 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 KCNE4Q8WWG9 221 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 WBP2Q969T9 261 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 HARBI1Q96MB7 349 aa7.57□□□□□ -1.2
YBX3-208ENST00000540447 TRAV2A0A0B4J234 112 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 IGHV2-5P01817 119 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 YRDCQ86U90 279 aaKnown RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 BCL6BQ8N143 479 aaPredicted RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 TRBV5-7A0A0A0MS05 114 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 ZFP36L2P47974 494 aaKnown RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 MBNL2Q5VZF2 373 aaKnown RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 MFRPQ9BY79 579 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 CRISPLD2Q9H0B8 497 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 CRIM1Q9NZV1 1036 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 IGHV3-20A0A0C4DH32 117 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 C1QTNF9P0C862 333 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 C3orf79P0CE67 100 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 LHX2P50458 406 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 RNPS1Q15287 305 aaKnown RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 ZNF793Q6ZN11 406 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 ANKRD33Q7Z3H0 272 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 FOXB1Q99853 325 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 SHROOM3Q8TF72 1996 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 FAM90A26D6RGX4 464 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 K7ESF4 209 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 NKX2-8O15522 239 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 SUMO3P55854 103 aaPredicted RBP7.56□□□□□ -1.2
YBX3-208ENST00000540447 WFDC12Q8WWY7 111 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 hDV102S1A0JD36 115 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 ACRP10323 421 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 LIMS1P48059 325 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 ATP5G3P48201 142 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 WFDC3Q8IUB2 231 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 TPRX1Q8N7U7 411 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 Q8NFD4 153 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 OR4C3Q8NH37 302 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 NEUROG3Q9Y4Z2 214 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 HS3ST3B1Q9Y662 390 aa7.56□□□□□ -1.2
YBX3-208ENST00000540447 CICQ96RK0 1608 aaPredicted RBP7.55□□□□□ -1.2
YBX3-208ENST00000540447 NDUFA3O95167 84 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 PEX11BO96011 259 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 C1orf100Q5SVJ3 147 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 SPATA46Q5T0L3 261 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 MOB3BQ86TA1 216 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 SLC25A2Q9BXI2 301 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 NGBQ9NPG2 151 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 NAV1Q8NEY1 1877 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 HYPMO75409 117 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 RPS20P60866 119 aaKnown RBP7.55□□□□□ -1.2
YBX3-208ENST00000540447 CCL20P78556 96 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 TMEM52BQ4KMG9 183 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 RNASE8Q8TDE3 154 aaKnown RBP7.55□□□□□ -1.2
YBX3-208ENST00000540447 FAM222BQ8WU58 562 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 CHCHD1Q96BP2 118 aaKnown RBP7.55□□□□□ -1.2
YBX3-208ENST00000540447 KLHDC3Q9BQ90 382 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 K7N7A8 449 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 IGLV3-25P01717 112 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 C8orf88P0DMB2 117 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 TMEM170BQ5T4T1 132 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 LCN12Q6JVE5 192 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 GNRHR2Q96P88 292 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 CXCL16Q9H2A7 254 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 HIGD1AQ9Y241 93 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 C1QCP02747 245 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 CD33P20138 364 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 MST1P26927 711 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 SSTR5P35346 364 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 CLLU1OSQ5K130 101 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 MRAPQ8TCY5 172 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 RASL11BQ9BPW5 248 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 MS4A5Q9H3V2 200 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 GPR35Q9HC97 309 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 A0A0G2JK05 382 aa7.55□□□□□ -1.2
YBX3-208ENST00000540447 A0A1B0GW64 132 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms