RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZNF329Q86UD4 541 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 LYSMD2Q8IV50 215 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 FOXRED2Q8IWF2 684 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 ZNF645Q8N7E2 425 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 RNF152Q8N8N0 203 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 DYNC2LI1Q8TCX1 351 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 GIMAP1Q8WWP7 306 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 MIXL1Q9H2W2 232 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 ADAM30Q9UKF2 790 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 MEIS3P1A6NDR6 274 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 H7C2Y5 167 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 SLC22A5O76082 557 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 CRYGBP07316 175 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 OR5H8P0DN80 308 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 PPIFP30405 207 aaKnown RBP10.19□□□□□ -0.78
VPS28-216ENST00000533806 FCGR2CP31995 323 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 PRSS3P35030 304 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 THBS3P49746 956 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 CRIP2P52943 208 aaPredicted RBP10.19□□□□□ -0.78
VPS28-216ENST00000533806 ARPC4P59998 168 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 MSMO1Q15800 293 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 TMEM177Q53S58 311 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 C19orf54Q5BKX5 351 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 MZT2AQ6P582 158 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 DHRS11Q6UWP2 260 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 OVCH2Q7RTZ1 564 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 OR4X2Q8NGF9 303 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 AP3S1Q92572 193 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 OR51J1Q9H342 316 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 FBXL15Q9H469 300 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 SCPEP1Q9HB40 452 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 SLC35D1Q9NTN3 355 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 NECAP2Q9NVZ3 263 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 TSSC4Q9Y5U2 329 aaPredicted RBP10.19□□□□□ -0.78
VPS28-216ENST00000533806 CEPT1Q9Y6K0 416 aa10.19□□□□□ -0.78
VPS28-216ENST00000533806 SMIM31A0A1B0GVY4 71 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 SRRM4A7MD48 611 aaKnown RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 H3BMQ9 156 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 TPPPO94811 219 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 SPDEFO95238 335 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 IGHG4P01861 327 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 APOA2P02652 100 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 OPN1MWP04001 364 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 FCER2P06734 321 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 OPN1MW2P0DN77 364 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 OPN1MW3P0DN78 364 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 EGR2P11161 476 aaPredicted RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 AADACP22760 399 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 LGALS7P47929 136 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 BRWD1-AS2P59051 145 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 RPL30P62888 115 aaKnown RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 CX3CL1P78423 397 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 NDPQ00604 133 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 CDK10Q15131 360 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 MRGPRG-AS1Q2M3A8 158 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 NSUN5P1Q3KNT7 163 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 COMMD1Q8N668 190 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 FAM110DQ8TAY7 271 aaPredicted RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 FLYWCH2Q96CP2 140 aaKnown RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 ADTRPQ96IZ2 230 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 KIAA1456Q9P272 454 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 RBMX2Q9Y388 322 aaKnown RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 FBXO7Q9Y3I1 522 aa10.18□□□□□ -0.78
VPS28-216ENST00000533806 RBM7Q9Y580 266 aaKnown RBP10.18□□□□□ -0.78
VPS28-216ENST00000533806 TET2Q6N021 2002 aaPredicted RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 TCRBV4S1A1TA0A5B7 111 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 J3QRK9 145 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 CTDSP2O14595 271 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 PPYP01298 95 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 RRASP10301 218 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 RFX2P48378 723 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 RPS16P62249 146 aaKnown RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 SSBP2P81877 361 aaPredicted RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 DYRK1AQ13627 763 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 TEX38Q6PEX7 206 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 ZNF562Q6V9R5 426 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 MINDY2Q8NBR6 621 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 BVESQ8NE79 360 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 ISOC1Q96CN7 298 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 ABHD1Q96SE0 405 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 TSNAXQ99598 290 aaKnown RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 GON7Q9BXV9 100 aa10.17□□□□□ -0.78
VPS28-216ENST00000533806 CCDC59Q9P031 241 aaKnown RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 MRPS7Q9Y2R9 242 aaKnown RBP10.17□□□□□ -0.78
VPS28-216ENST00000533806 G3V318 75 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 SULT1C2O00338 296 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 ATP6V0E1O15342 81 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 IGLV1-40P01703 118 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 PSMB8P28062 276 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 SLC35B1P78383 322 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 FOXE3Q13461 319 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 KIAA0141Q14154 515 aaPredicted RBP10.16□□□□□ -0.78
VPS28-216ENST00000533806 SNX29P2Q8IUI4 249 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 WFDC9Q8NEX5 89 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 MYOZ3Q8TDC0 251 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 SLIRPQ9GZT3 109 aaKnown RBP10.16□□□□□ -0.78
VPS28-216ENST00000533806 RBM38Q9H0Z9 239 aaKnown RBP10.16□□□□□ -0.78
VPS28-216ENST00000533806 IFT46Q9NQC8 304 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 CCL28Q9NRJ3 127 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 TPSG1Q9NRR2 321 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms