RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SLC35B1P78383 322 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 ZSCAN26Q16670 478 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 TMEM183BQ1AE95 376 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 TBC1D28Q2M2D7 210 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 ABCA11PQ4W5N1 156 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 HSP90AA4PQ58FG1 418 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 FAM201AQ5SY85 155 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 THEM4Q5T1C6 240 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 MED27Q6P2C8 311 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 FAM122BQ7Z309 247 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 HDDC2Q7Z4H3 204 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 CBLN2Q8IUK8 224 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 TMEM183AQ8IXX5 376 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 Q8N9W7 124 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 LRRC75AQ8NAA5 344 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 OR11H1Q8NG94 326 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 OR4S2Q8NH73 311 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 UBALD1Q8TB05 177 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 KLF14Q8TD94 323 aaPredicted RBP2.38□□□□□ -2.03
CD44-235ENST00000532339 C4orf3Q8WVX3 66 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 ZNF681Q96N22 645 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 OPALINQ96PE5 141 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 ALX4Q9H161 411 aaPredicted RBP2.38□□□□□ -2.03
CD44-235ENST00000532339 TMEM38AQ9H6F2 299 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 CHRAC1Q9NRG0 131 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 KCNE3Q9Y6H6 103 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 COMMD3-BMI1R4GMX3 469 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 DNAH8Q96JB1 4490 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 MACF1Q9UPN3 7388 aaKnown RBP2.38□□□□□ -2.03
CD44-235ENST00000532339 NCBP2LA6PVI3 153 aaKnown RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 M0R1W7 72 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 ZNF189O75820 626 aaPredicted RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 SEMA3DO95025 777 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 VAMP5O95183 116 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 VAPBO95292 243 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 PTHP01270 115 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 IGLV1-51P01701 117 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 HBE1P02100 147 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 ARG1P05089 322 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 UBTFL6P0CB48 400 aaPredicted RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 OR5H8P0DN80 308 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 CCL2P13500 99 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 SRMP19623 302 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 GABRA3P34903 492 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 CDKN2BP42772 138 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 RPS10P46783 165 aaKnown RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 FBXO48Q5FWF7 155 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 CCNJQ5T5M9 372 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 UBE2UQ5VVX9 321 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 HCP5Q6MZN7 132 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 NOXRED1Q6NXP6 359 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 OAFQ86UD1 273 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 PGAM4Q8N0Y7 254 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 OR9A2Q8NGT5 310 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 OR5W2Q8NH69 310 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 TMEM234Q8WY98 164 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 RGP1Q92546 391 aaPredicted RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 IL22RA2Q969J5 263 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 EEF1AKMT3Q96AZ1 226 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 CREB3L1Q96BA8 519 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 HAUS1Q96CS2 278 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 OR4C12Q96R67 309 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 MICU1Q9BPX6 476 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 HDHD3Q9BSH5 251 aaPredicted RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 ZNF331Q9NQX6 463 aaPredicted RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 CLN6Q9NWW5 311 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 RWDD2AQ9UIY3 292 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 PSG8Q9UQ74 426 aa2.37□□□□□ -2.03
CD44-235ENST00000532339 RCL1Q9Y2P8 373 aaKnown RBP2.37□□□□□ -2.03
CD44-235ENST00000532339 C11orf94C9JXX5 98 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 PSMG1O95456 288 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 RAB3DO95716 219 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 IFNA10P01566 189 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SERPINE1P05121 402 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SRP9P49458 86 aaKnown RBP2.36□□□□□ -2.03
CD44-235ENST00000532339 CCNG1P51959 295 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 TAS2R39P59534 338 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 ZNF616Q08AN1 781 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 MPPED2Q15777 294 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 POU2AF1Q16633 256 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 RPEL1Q2QD12 228 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 ARL9Q6T311 187 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 TIFABQ6ZNK6 161 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 Q6ZR03 302 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 C6orf120Q7Z4R8 191 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 RNF175Q8N4F7 328 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 PROKR2Q8NFJ6 384 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SLC25A40Q8TBP6 338 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 GIMAP1Q8WWP7 306 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SEH1LQ96EE3 360 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 MALSU1Q96EH3 234 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 CERS2Q96G23 380 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 FAM210BQ96KR6 192 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SHCBP1LQ9BZQ2 653 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 OR2J1Q9GZK6 312 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 IL22Q9GZX6 179 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 RGCCQ9H4X1 137 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 TP53TG1Q9Y2A0 90 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 SAR1BQ9Y6B6 198 aa2.36□□□□□ -2.03
CD44-235ENST00000532339 H0Y980 276 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms