RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 RRP15Q9Y3B9 282 aaKnown RBP10.38□□□□□ -0.75
VPS28-211ENST00000530790 FBXO7Q9Y3I1 522 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 RBM7Q9Y580 266 aaKnown RBP10.38□□□□□ -0.75
VPS28-211ENST00000530790 PROP1O75360 226 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 CA2P00918 260 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 OR8U8P0C7N1 319 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 DTYMKP23919 212 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 LUMP51884 338 aaPredicted RBP10.37□□□□□ -0.75
VPS28-211ENST00000530790 LINC00205P59089 165 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 TMEM267Q0VDI3 215 aaPredicted RBP10.37□□□□□ -0.75
VPS28-211ENST00000530790 PSG5Q15238 335 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 SRSF7Q16629 238 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS28-211ENST00000530790 KCTD21Q4G0X4 260 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 PYHIN1Q6K0P9 492 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 Q6ZS49 121 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 ZNF491Q8N8L2 437 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 OR11H1Q8NG94 326 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 LGALS14Q8TCE9 139 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 DNAH3Q8TD57 4116 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 FLYWCH2Q96CP2 140 aaKnown RBP10.37□□□□□ -0.75
VPS28-211ENST00000530790 OR51E2Q9H255 320 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS28-211ENST00000530790 SDHAF2Q9NX18 166 aa10.37□□□□□ -0.75
VPS28-211ENST00000530790 WI2-2373I1.2A0A1W2PRP0 233 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 I3L521 148 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 FCN1O00602 326 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 SLC25A17O43808 307 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 SNRPBP14678 240 aaKnown RBP10.36□□□□□ -0.75
VPS28-211ENST00000530790 RAB9AP51151 201 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 DGCR2P98153 550 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 ZNF616Q08AN1 781 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 NEDD8Q15843 81 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 CDNFQ49AH0 187 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 C19orf54Q5BKX5 351 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 C9orf66Q5T8R8 295 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 HACD4Q5VWC8 232 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 PPP1R27Q86WC6 154 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 ARPC1AQ92747 370 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 HARBI1Q96MB7 349 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 OR5B12Q96R08 314 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 FAM103A1Q9BTL3 118 aaKnown RBP10.36□□□□□ -0.75
VPS28-211ENST00000530790 TPSG1Q9NRR2 321 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 GAB2Q9UQC2 676 aa10.36□□□□□ -0.75
VPS28-211ENST00000530790 LOC100506127A0A0U1RQW1 187 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 TMEM235A6NFC5 223 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 SEC14L6B5MCN3 397 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 SOX15O60248 233 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 CD40LGP29965 261 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 SDC2P34741 201 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 SCAND1P57086 179 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 GNG2P59768 71 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 GNB1P62873 340 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 PITPNAQ00169 270 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 RUNX1Q01196 453 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 TAGLNQ01995 201 aaKnown RBP10.35□□□□□ -0.75
VPS28-211ENST00000530790 MXD1Q05195 221 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 DCTN2Q13561 401 aaKnown RBP10.35□□□□□ -0.75
VPS28-211ENST00000530790 KIAA0141Q14154 515 aaPredicted RBP10.35□□□□□ -0.75
VPS28-211ENST00000530790 RTL8BQ17RB0 113 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 ACTBL2Q562R1 376 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 DEFB121Q5J5C9 76 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 UNQ5815/PRO19632Q6UWF5 114 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 ZNF562Q6V9R5 426 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 H1FOOQ8IZA3 346 aaPredicted RBP10.35□□□□□ -0.75
VPS28-211ENST00000530790 OR1N2Q8NGR9 330 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 GRPEL2Q8TAA5 225 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 NUDCD2Q8WVJ2 157 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 C5orf30Q96GV9 206 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 RHBDL2Q9NX52 303 aa10.35□□□□□ -0.75
VPS28-211ENST00000530790 ELF5Q9UKW6 265 aaPredicted RBP10.35□□□□□ -0.75
VPS28-211ENST00000530790 IGKV1D-8A0A087WSZ0 117 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 RAMP3O60896 148 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 LGALS1P09382 135 aaKnown RBP10.34□□□□□ -0.75
VPS28-211ENST00000530790 CTXN2P0C2S0 81 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 RRASP10301 218 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 EGR2P11161 476 aaPredicted RBP10.34□□□□□ -0.75
VPS28-211ENST00000530790 CD36P16671 472 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 LGALS7P47929 136 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 FXYD3Q14802 87 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 AKIRIN2Q53H80 203 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 LFNGQ8NES3 379 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 CASTOR1Q8WTX7 329 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 ADTRPQ96IZ2 230 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 ST6GALNAC5Q9BVH7 336 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 DCSTAMPQ9H295 470 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 NUBP2Q9Y5Y2 271 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 ETV7Q9Y603 341 aa10.34□□□□□ -0.75
VPS28-211ENST00000530790 SHOXO15266 292 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 CNIH1O95406 144 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 IGLV2-23P01705 113 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 CLEC2LP0C7M8 214 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 TPPP2P59282 170 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 ZNF260Q3ZCT1 412 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 IDNKQ5T6J7 187 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 ASPHD1Q5U4P2 390 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 BVESQ8NE79 360 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 ALX4Q9H161 411 aaPredicted RBP10.33□□□□□ -0.76
VPS28-211ENST00000530790 SLA2Q9H6Q3 261 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 RNF167Q9H6Y7 350 aa10.33□□□□□ -0.76
VPS28-211ENST00000530790 ARPC1BO15143 372 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms