RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 APOBEC3DQ96AK3 386 aaPredicted RBP11.99□□□□□ -0.49
USP48-213ENST00000529637 OR2J1Q9GZK6 312 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 COLQQ9Y215 455 aaPredicted RBP11.99□□□□□ -0.49
USP48-213ENST00000529637 NEURL1O76050 574 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 CRYAAP02489 173 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 ZNF16P17020 682 aaPredicted RBP11.99□□□□□ -0.49
USP48-213ENST00000529637 LINC00310P59036 64 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TMEM164Q5U3C3 297 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 PCSK4Q6UW60 755 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TMPRSS7Q7RTY8 843 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 OR5P3Q8WZ94 311 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 IMMP2LQ96T52 175 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 ZNF703Q9H7S9 590 aaPredicted RBP11.99□□□□□ -0.49
USP48-213ENST00000529637 FOXJ2Q9P0K8 574 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 CNOT1A5YKK6 2376 aaKnown RBP11.98□□□□□ -0.49
USP48-213ENST00000529637 ANKRD30BLA7E2S9 258 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 CD300LBA8K4G0 201 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 M0QZK8 103 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 IGKV1-5P01602 117 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 C1QTNF9P0C862 333 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 LHX2P50458 406 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 FGF12P61328 243 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 TPTE2P1Q5T6R2 138 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 ZNF114Q8NC26 417 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 MIEN1Q9BRT3 115 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 RNF150Q9ULK6 438 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 TMEM250H0YL14 139 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 IL6RP08887 468 aaPredicted RBP11.98□□□□□ -0.49
USP48-213ENST00000529637 LINC00614P0C842 121 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 ADMP35318 185 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 ANAPC16Q96DE5 110 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 TTTY12Q9BZ98 90 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 FGF23Q9GZV9 251 aaPredicted RBP11.98□□□□□ -0.49
USP48-213ENST00000529637 TMEM106BQ9NUM4 274 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 ERRFI1Q9UJM3 462 aaPredicted RBP11.98□□□□□ -0.49
USP48-213ENST00000529637 PXMP4Q9Y6I8 212 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 KIR2DS1A0A191URI9 304 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 SIAH2O43255 324 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 KIR2DS4P43632 304 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 KIR2DS1Q14954 304 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 CEACAM21Q3KPI0 293 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 VN1R17PQ8TDU5 208 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 RNF114Q9Y508 228 aa11.98□□□□□ -0.49
USP48-213ENST00000529637 TECTAO75443 2155 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 F2Z2F3 143 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 CA6P23280 308 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 S100GP29377 79 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 KRTAP27-1Q3LI81 207 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 ANKRD39Q53RE8 183 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 SPSB4Q96A44 273 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 DEFB127Q9H1M4 99 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 MSL2Q9HCI7 577 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 PRR14LQ5THK1 2151 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 C9orf172C9J069 976 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 SRP14P37108 136 aaKnown RBP11.97□□□□□ -0.49
USP48-213ENST00000529637 MPLP40238 635 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 CLDN18P56856 261 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 NUFIP2Q7Z417 695 aaKnown RBP11.97□□□□□ -0.49
USP48-213ENST00000529637 TMEM251Q8N6I4 163 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 PINX1Q96BK5 328 aaKnown RBP11.97□□□□□ -0.49
USP48-213ENST00000529637 WDYHV1Q96HA8 205 aa11.97□□□□□ -0.49
USP48-213ENST00000529637 TNFSF13O75888 250 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 WNT2P09544 360 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 TDGF1P13385 188 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 SLC38A11Q08AI6 406 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 CMTM2Q8TAZ6 248 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 TMEM45BQ96B21 275 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 KCNS2Q9ULS6 477 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 PPP1R3CQ9UQK1 317 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 HBG1P69891 147 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 HBG2P69892 147 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 LINC01551Q86U37 167 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 PATZ1Q9HBE1 687 aaKnown RBP11.96□□□□□ -0.49
USP48-213ENST00000529637 DNAJC4Q9NNZ3 241 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 OR1A1Q9P1Q5 309 aa11.96□□□□□ -0.49
USP48-213ENST00000529637 FRMD6-AS1P0C7T7 363 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 HNF1AP20823 631 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 CD82P27701 267 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 UBE2G2P60604 165 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 KCNIP4Q6PIL6 250 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 COLCA1Q6ZS62 124 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 TMEM144Q7Z5S9 345 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 OR10G9Q8NGN4 311 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 OR10G7Q8NGN6 311 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 HSPB9Q9BQS6 159 aa11.96□□□□□ -0.5
USP48-213ENST00000529637 RBFOX2O43251 390 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP48-213ENST00000529637 IGLV2-14P01704 120 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 ACP1P24666 158 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 ACSF3Q4G176 576 aaPredicted RBP11.95□□□□□ -0.5
USP48-213ENST00000529637 C11orf42Q8N5U0 333 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 C20orf144Q9BQM9 153 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 ATP23Q9Y6H3 246 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 MED12LQ86YW9 2145 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 SIRPB1O00241 398 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 MMDQ15546 238 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 ZNF324BQ6AW86 544 aaPredicted RBP11.95□□□□□ -0.5
USP48-213ENST00000529637 TEX43Q6ZNM6 134 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 Q6ZVH6 145 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 SGMS2Q8NHU3 365 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 PRO3102Q9H379 93 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms