RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 FHL5Q5TD97 284 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 RPL22L1Q6P5R6 122 aaKnown RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 IGFL2Q6UWQ7 119 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 IZUMO2Q6UXV1 221 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 IL34Q6ZMJ4 242 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 ARPINQ7Z6K5 226 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 CBLN2Q8IUK8 224 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 GAPTQ8N292 157 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 MMGT1Q8N4V1 131 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 FER1L6-AS1Q8NA97 138 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 PLPP5Q8NEB5 264 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 OR5A2Q8NGI9 324 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 OR52E2Q8NGJ4 325 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 OR51A2Q8NGJ7 313 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 OR2G3Q8NGZ4 309 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 OR2T4Q8NH00 348 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 FNDC9Q8TBE3 224 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 C7orf33Q8WU49 177 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 GEMIN6Q8WXD5 167 aaKnown RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 DCUN1D1Q96GG9 259 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 PGLYRP3Q96LB9 341 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 IP6K3Q96PC2 410 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 RTBDNQ9BSG5 229 aaPredicted RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 GTSF1LQ9H1H1 148 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 MMP26Q9NRE1 261 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 LYRM2Q9NU23 88 aaPredicted RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 MCTS1Q9ULC4 181 aaKnown RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 BOKQ9UMX3 212 aaPredicted RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 PKIGQ9Y2B9 76 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.4□□□□□ -2.03
CD44-229ENST00000528672 CSAG2Q9Y5P2 127 aa2.4□□□□□ -2.03
CD44-229ENST00000528672 KDM5AP29375 1690 aaKnown RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 RAI1Q7Z5J4 1906 aaPredicted RBP2.4□□□□□ -2.03
CD44-229ENST00000528672 GRIN2AQ12879 1464 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 COL22A1Q8NFW1 1626 aaPredicted RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 HCFC1P51610 2035 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 TOP2AP11388 1531 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 ZNFX1Q9P2E3 1918 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 FAM236DA0A1B0GTK5 79 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 C9JAW5 83 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 INMT-MINDY4F8WBC2 141 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 M0R2Z0 102 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 NME4O00746 187 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 PHOX2AO14813 284 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 EDF1O60869 148 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 YIF1AO95070 293 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 CDRT1O95170 752 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 APOC3P02656 99 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 CD2P06729 351 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 GIG44P09565 113 aaPredicted RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 OR5AL1P0C617 328 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 CHTF8P0CG12 524 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 FAM236CP0DP71 79 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 CNTFRP26992 372 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 TGFBR1P36897 503 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 EMP1P54849 157 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 ARPP19P56211 112 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 RAB38P57729 211 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 TIMM10P62072 90 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 RPS21P63220 83 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 PSG9Q00887 426 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 HSD52Q0P140 79 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 PSG7Q13046 419 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 ZNF266Q14584 549 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 IHHQ14623 411 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 GLYATL3Q5SZD4 288 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 CASC10Q5T4H9 136 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 GLIPR1L1Q6UWM5 242 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 RFLNAQ6ZTI6 216 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 GOLT1AQ6ZVE7 132 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 ZNF720Q7Z2F6 126 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 TMEM61Q8N0U2 210 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 C14orf178Q8N769 122 aaPredicted RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 OR11H6Q8NGC7 330 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR4K5Q8NGD3 323 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR10AD1Q8NGE0 317 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR10D4PQ8NGN7 298 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR2A1Q8NGT9 310 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR1S1Q8NH92 325 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 SRSF12Q8WXF0 261 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 BORCS7Q96B45 105 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 MRPS24Q96EL2 167 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 BTN2A3PQ96KV6 586 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 BMFQ96LC9 184 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 HYLS1Q96M11 299 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR4K3Q96R72 315 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 DEFB127Q9H1M4 99 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 TMEM133Q9H2Q1 129 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 OR51I2Q9H344 312 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 ZNF442Q9H7R0 627 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 REEP1Q9H902 201 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 HES4Q9HCC6 221 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 EXOSC4Q9NPD3 245 aaKnown RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 TMEM9BQ9NQ34 198 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 ACER3Q9NUN7 267 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 COMMD3Q9UBI1 195 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 HIGD1AQ9Y241 93 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 POLR1DQ9Y2S0 133 aa2.39□□□□□ -2.03
CD44-229ENST00000528672 PCYT1BQ9Y5K3 369 aaPredicted RBP2.39□□□□□ -2.03
CD44-229ENST00000528672 MYH11P35749 1972 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms