RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OR13D1Q8NGV5 346 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 RFESDQ8TAC1 157 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 NANPQ8TBE9 248 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 LINC00473A8K010 186 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 ATXN7O15265 892 aaPredicted RBP17.71■□□□□ 0.43
VPS28-205ENST00000526204 CTAG1AP78358 180 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 VWC2Q2TAL6 325 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 BEND4Q6ZU67 534 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 TMPRSS5Q9H3S3 457 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 DKK4Q9UBT3 224 aa17.71■□□□□ 0.43
VPS28-205ENST00000526204 IGHV3-43A0A0B4J1X8 118 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 CTXND1A0A1B0GTU2 59 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 MARCH11A6NNE9 402 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 ST8SIA5O15466 376 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 IGKV1D-33P01593 117 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 IGKV1-33P01594 117 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 IGHV3-43DP0DP04 118 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 FGF7P21781 194 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 CFHR2P36980 270 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 RND2P52198 227 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 GNB2P62879 340 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 SLC16A13Q7RTY0 426 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 OR2Z1Q8NG97 314 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 PPP1R35Q8TAP8 253 aa17.71■□□□□ 0.42
VPS28-205ENST00000526204 OPN3Q9H1Y3 402 aaPredicted RBP17.71■□□□□ 0.42
VPS28-205ENST00000526204 NDUFS6O75380 124 aaKnown RBP17.7■□□□□ 0.42
VPS28-205ENST00000526204 WT1P19544 449 aaPredicted RBP17.7■□□□□ 0.42
VPS28-205ENST00000526204 HOXA5P20719 270 aa17.7■□□□□ 0.42
VPS28-205ENST00000526204 MEF2BQ02080 365 aaPredicted RBP17.7■□□□□ 0.42
VPS28-205ENST00000526204 ACSM6Q6P461 480 aa17.7■□□□□ 0.42
VPS28-205ENST00000526204 ZNF709Q8N972 641 aa17.7■□□□□ 0.42
VPS28-205ENST00000526204 CTDSP1Q9GZU7 261 aa17.7■□□□□ 0.42
VPS28-205ENST00000526204 SLC25A15Q9Y619 301 aa17.7■□□□□ 0.42
VPS28-205ENST00000526204 TGIF2-C20orf24A0A0A6YYL0 155 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 DEFB108AA8MXU0 73 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 SRRM5B3KS81 715 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 CYB5BO43169 146 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 TGOLN2O43493 480 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 PSMB3P49720 205 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 C1orf87Q8N0U7 546 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 OR10G9Q8NGN4 311 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 OR10G7Q8NGN6 311 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 ZDHHC16Q969W1 377 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 ACTR3CQ9C0K3 210 aaPredicted RBP17.69■□□□□ 0.42
VPS28-205ENST00000526204 JPT1Q9UK76 154 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 KIAA2026Q5HYC2 2103 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 CACNA1HO95180 2353 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 SPAARA0A1B0GVQ0 90 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 FAM90A9PA6NNJ1 464 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 CLN5O75503 358 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 GPR12P47775 334 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 B2MP61769 119 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 EDDM3AQ14507 147 aa17.69■□□□□ 0.42
VPS28-205ENST00000526204 WDR25Q64LD2 544 aaPredicted RBP17.69■□□□□ 0.42
VPS28-205ENST00000526204 C17orf112F2Z3M2 114 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 TMEM250H0YL14 139 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 MGST3O14880 152 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 CR1LQ2VPA4 569 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 R3HDM4Q96D70 268 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 SNX22Q96L94 193 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 NPCDR1Q9BY65 106 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 MANBALQ9NQG1 85 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 NAT8Q9UHE5 227 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 MBD3L4A6NDZ8 208 aaPredicted RBP17.68■□□□□ 0.42
VPS28-205ENST00000526204 MBD3L3A6NE82 208 aaPredicted RBP17.68■□□□□ 0.42
VPS28-205ENST00000526204 MBD3L5A6NJ08 208 aaPredicted RBP17.68■□□□□ 0.42
VPS28-205ENST00000526204 DUTP33316 252 aaKnown RBP17.68■□□□□ 0.42
VPS28-205ENST00000526204 CD81P60033 236 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 DEFB109BQ30KR1 87 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 AARDQ4LEZ3 155 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 FFAR4Q5NUL3 377 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 MBD3L2Q8NHZ7 208 aaPredicted RBP17.68■□□□□ 0.42
VPS28-205ENST00000526204 FAM210BQ96KR6 192 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 GNG12Q9UBI6 72 aa17.68■□□□□ 0.42
VPS28-205ENST00000526204 IGKV1D-17A0A075B6S4 117 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 HPRT1P00492 218 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 OPN1MWP04001 364 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 OPN1MW2P0DN77 364 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 OPN1MW3P0DN78 364 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 MDKP21741 143 aaPredicted RBP17.67■□□□□ 0.42
VPS28-205ENST00000526204 CDX1P47902 265 aaPredicted RBP17.67■□□□□ 0.42
VPS28-205ENST00000526204 MORN2Q502X0 79 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 IGF2-ASQ6U949 168 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 SMIM7Q9BQ49 75 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 NIT2Q9NQR4 276 aa17.67■□□□□ 0.42
VPS28-205ENST00000526204 YPEL1O60688 119 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 CEACAM4O75871 244 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 RPP30P78346 268 aaKnown RBP17.66■□□□□ 0.42
VPS28-205ENST00000526204 NCMAPQ5T1S8 102 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 NCR3LG1Q68D85 454 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 CYP2G1PQ6ZSU1 146 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 ZADH2Q8N4Q0 377 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 YPEL2Q96QA6 119 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 DCTN5Q9BTE1 182 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 SLC25A22Q9H936 323 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 DOK5Q9P104 306 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 DUSP13Q9UII6 198 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 TMEM241Q24JQ0 296 aa17.66■□□□□ 0.42
VPS28-205ENST00000526204 RBFOX2O43251 390 aaKnown RBP eCLIP17.65■□□□□ 0.424e-8■■■■□ 26.4
VPS28-205ENST00000526204 GALR2O43603 387 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms