RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ARPC5O15511 151 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 NIPSNAP2O75323 286 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 RBBP9O75884 186 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 MT-ND4P03905 459 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 OR12D1P0DN82 309 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 COX5BP10606 129 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 CD79BP40259 229 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 RBP2P50120 134 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 PRR3P79522 188 aaKnown RBP4.93□□□□□ -1.62
LSM1-202ENST00000520286 ZNF266Q14584 549 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 PEA15Q15121 130 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 CYB5R2Q6BCY4 276 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 SFXN4Q6P4A7 337 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 SMARCD3Q6STE5 483 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 LRRN1Q6UXK5 716 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 SLC36A1Q7Z2H8 476 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 TAC4Q86UU9 113 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 SLC30A8Q8IWU4 369 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 FANCMQ8IYD8 2048 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 ZNF561Q8N587 486 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 KCNRGQ8N5I3 272 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 OR4K2Q8NGD2 314 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 TFGQ92734 400 aaPredicted RBP4.93□□□□□ -1.62
LSM1-202ENST00000520286 MRGPRFQ96AM1 343 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 PFDN5Q99471 154 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 RDH14Q9HBH5 336 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 HRASLSQ9HDD0 168 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 TMEM100Q9NV29 134 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 DHCR7Q9UBM7 475 aaKnown RBP4.93□□□□□ -1.62
LSM1-202ENST00000520286 ASH1LQ9NR48 2969 aaKnown RBP4.92□□□□□ -1.62
LSM1-202ENST00000520286 MYO16Q9Y6X6 1858 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 ASPMQ8IZT6 3477 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TRAV14DV4A0A0A6YYC5 116 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 PINLYPA6NC86 204 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 RFPL4AA6NLU0 287 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 F5H5P2 479 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 RFPL4AL1F8VTS6 287 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 INS-IGF2F8WCM5 200 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 FFAR1O14842 300 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CDC40O60508 579 aaKnown RBP eCLIP4.92□□□□□ -1.62
LSM1-202ENST00000520286 CREBL2O60519 120 aaPredicted RBP4.92□□□□□ -1.62
LSM1-202ENST00000520286 NDUFB6O95139 128 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 PDYNP01213 254 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CD3GP09693 182 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CD79AP11912 226 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CCR7P32248 378 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CSNK1A1P48729 337 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TTPAP49638 278 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 FABP6P51161 128 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 P2RX1P51575 399 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 HCCSP53701 268 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CLDN6P56747 220 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 UBE2IP63279 158 aaKnown RBP4.92□□□□□ -1.62
LSM1-202ENST00000520286 SMCO1Q147U7 214 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TRAM1Q15629 374 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 C5orf64Q2M2E5 130 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CHRFAM7AQ494W8 412 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 GCSAMLQ5JQS6 135 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 IDNKQ5T6J7 187 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 LINC00336Q6ZUF6 198 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 SLC35D2Q76EJ3 337 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 OR2W3Q7Z3T1 314 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 NAA40Q86UY6 237 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CLECL1Q8IZS7 167 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 ZFP82Q8N141 532 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 FAM58AQ8N1B3 248 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 NOXO1Q8NFA2 376 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 OR5AR1Q8NGP9 310 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 RNASE11Q8TAA1 199 aaKnown RBP4.92□□□□□ -1.62
LSM1-202ENST00000520286 HIST1H2BAQ96A08 127 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TM6SF2Q9BZW4 377 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TUBA4BQ9H853 241 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 EDA2RQ9HAV5 297 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 TMEM138Q9NPI0 162 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 ABRACLQ9P1F3 81 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 CBY1Q9Y3M2 126 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 ARL5AQ9Y689 179 aa4.92□□□□□ -1.62
LSM1-202ENST00000520286 HELZP42694 1942 aaKnown RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 CEP295Q9C0D2 2601 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 FRYQ5TBA9 3013 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 FXYD6-FXYD2A0A087WZ82 144 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 TRAV1-2A0A0B4J238 106 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ANKRD20A5PA0PJZ0 165 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 OR6C74A6NCV1 312 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 MKRN2OSH3BPM6 223 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 J3QRE1 110 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ETHE1O95571 254 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 CD8AP01732 235 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 OPN1SWP03999 348 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 KLK1P06870 262 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 SLC25A4P12235 298 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ZNF35P13682 527 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ADRB3P13945 408 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 RAB5AP20339 215 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 AGTR1P30556 359 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 OR1E2P47887 323 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 H2BFSP57053 126 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 AP3S2P59780 193 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 RAB8AP61006 207 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 UBE2NP61088 152 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms