RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	RIMS4	Q9H426	269 aa	Predicted RBP	11.92	□□□□□ -0.5
LMNA-223	ENST00000515459	PLEKHJ1	Q9NW61	149 aa		11.92	□□□□□ -0.5
LMNA-223	ENST00000515459	COA4	Q9NYJ1	87 aa		11.92	□□□□□ -0.5
LMNA-223	ENST00000515459	ALMS1	Q8TCU4	4167 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	TRBV6-6	A0A0A6YYG2	114 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	RBMY1B	A6NDE4	496 aa	Known RBP	11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	RBMY1E	A6NEQ0	496 aa	Known RBP	11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	RBMY1D	P0C7P1	496 aa	Known RBP	11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	CEL	P19835	753 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	HLA-DRB3	P79483	266 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	CD300E	Q496F6	205 aa	Predicted RBP	11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	DEFB125	Q8N687	156 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	KCNG3	Q8TAE7	436 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	NICN1	Q9BSH3	213 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	TM2D1	Q9BX74	207 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	SLC35D1	Q9NTN3	355 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	MGAT4A	Q9UM21	535 aa		11.91	□□□□□ -0.5
LMNA-223	ENST00000515459	IGLV2-23	P01705	113 aa		11.9	□□□□□ -0.5
LMNA-223	ENST00000515459	CRYGB	P07316	175 aa		11.9	□□□□□ -0.5
LMNA-223	ENST00000515459	CD7	P09564	240 aa		11.9	□□□□□ -0.5
LMNA-223	ENST00000515459	SRD5A3	Q9H8P0	318 aa		11.9	□□□□□ -0.5
LMNA-223	ENST00000515459	ZNF785	A8K8V0	405 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	OR11H12	B2RN74	326 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459		M0R1X1	148 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	CD1A	P06126	327 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	SCT	P09683	121 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	UNC119	Q13432	240 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	GLT8D1	Q68CQ7	371 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	C10orf67	Q8IYJ2	551 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	HARBI1	Q96MB7	349 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	PHB2	Q99623	299 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	WFDC10A	Q9H1F0	79 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	KCNK15	Q9H427	330 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	SMPD3	Q9NY59	655 aa	Predicted RBP	11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	AK3	Q9UIJ7	227 aa		11.89	□□□□□ -0.51
LMNA-223	ENST00000515459	RBMXL2	O75526	392 aa	Known RBP	11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	LY6G6C	O95867	125 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	APELA	P0DMC3	54 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	ST3GAL4	Q11206	333 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	C1orf100	Q5SVJ3	147 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	TTC23	Q5W5X9	447 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	ADAD2	Q8NCV1	583 aa	Known RBP	11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	DYNLRB2	Q8TF09	96 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	GGH	Q92820	318 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459		Q9N2K0	584 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459	RDH8	Q9NYR8	311 aa		11.88	□□□□□ -0.51
LMNA-223	ENST00000515459		A0A0A6YYD4	124 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	EFCAB10	A6NFE3	127 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	MSGN1	A6NI15	193 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	TMEM14DP	A8MWL7	114 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	BMPR1B	O00238	502 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	SHOX	O15266	292 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	OR9G9	P0C7N8	305 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	CBX3	Q13185	183 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	GUCA2B	Q16661	112 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	PQLC1	Q8N2U9	271 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	C12orf4	Q9NQ89	552 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	FAM53C	Q9NYF3	392 aa		11.87	□□□□□ -0.51
LMNA-223	ENST00000515459	FAM223B	A6NKX1	122 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	MYL12B	O14950	172 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	MPPED1	O15442	326 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	SOCS1	O15524	211 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	SRM	P19623	302 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	WNT4	P56705	351 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	QRFP	P83859	136 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	RHOG	P84095	191 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	EXOSC2	Q13868	293 aa	Known RBP	11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	INSL4	Q14641	139 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	DEFB114	Q30KQ6	69 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	TMEM177	Q53S58	311 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	RBM48	Q5RL73	367 aa	Known RBP	11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	LRRTM1	Q86UE6	522 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	FAM223A	Q8IWN6	122 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	PHYHIP	Q92561	330 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	KCTD12	Q96CX2	325 aa	Known RBP	11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	URM1	Q9BTM9	101 aa	Known RBP	11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	AKIP1	Q9NQ31	210 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	HSF4	Q9ULV5	492 aa		11.86	□□□□□ -0.51
LMNA-223	ENST00000515459	IGKV1-6	A0A0C4DH72	117 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	SRRM4	A7MD48	611 aa	Known RBP	11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	TUSC2	O75896	110 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	BPNT1	O95861	308 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	KIR2DS2	P43631	304 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	TAGLN	Q01995	201 aa	Known RBP	11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	ATP5G2	Q06055	141 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	TNXA	Q16473	311 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	RTL8B	Q17RB0	113 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	MRGPRG-AS1	Q2M3A8	158 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	ACSM3	Q53FZ2	586 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	SETD9	Q8NE22	299 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	ST6GALNAC5	Q9BVH7	336 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	LPAR5	Q9H1C0	372 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	OR2D2	Q9H210	308 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	S100A14	Q9HCY8	104 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	ZC4H2	Q9NQZ6	224 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	SDHAF2	Q9NX18	166 aa		11.85	□□□□□ -0.51
LMNA-223	ENST00000515459	TECR	Q9NZ01	308 aa	Known RBP	11.85	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms