RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 FSCN3Q9NQT6 498 aa11.48□□□□□ -0.57
TCOF1-214ENST00000515035 POLR2AP24928 1970 aaKnown RBP11.48□□□□□ -0.57
TCOF1-214ENST00000515035 CLDN14O95500 239 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 ARL14EPLP0DKL9 152 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 CRYBB3P26998 211 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 REG1BP48304 166 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 PMS2CLQ68D20 193 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 SELENOHQ8IZQ5 122 aaKnown RBP11.47□□□□□ -0.57
TCOF1-214ENST00000515035 SFRP2Q96HF1 295 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 XIRP1Q702N8 1843 aaKnown RBP11.47□□□□□ -0.57
TCOF1-214ENST00000515035 TMEM250H0YL14 139 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 NPIPB7O75200 414 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 IGKV1D-16P01601 117 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 ZNF708P17019 499 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 APOBEC4Q8WW27 367 aaKnown RBP11.47□□□□□ -0.57
TCOF1-214ENST00000515035 GPHA2Q96T91 129 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 MAP1LC3AQ9H492 121 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 C3AR1Q16581 482 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 TEX30Q5JUR7 227 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 FAM27BQ5VT28 67 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 C14orf144Q96I85 54 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 WFDC6Q9BQY6 131 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 OPN3Q9H1Y3 402 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-214ENST00000515035 ARFGEF1Q9Y6D6 1849 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 SHANK3Q9BYB0 1731 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 CACNA1DQ01668 2161 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 A0A1W2PQF6 199 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 MMDQ15546 238 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 UNQ9370/PRO34162Q6UXP9 181 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 SPRED2Q7Z698 418 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 WNT10AQ9GZT5 417 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 GLRX2Q9NS18 164 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 AUP1Q9Y679 476 aa11.47□□□□□ -0.57
TCOF1-214ENST00000515035 FOCADQ5VW36 1801 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 A1L4Q6 167 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 FAM90A26D6RGX4 464 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 ISG15P05161 165 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 CCL3P10147 92 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 C9orf40Q8IXQ3 194 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 TRPM6Q9BX84 2022 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 RBFOX2O43251 390 aaKnown RBP eCLIP11.46□□□□□ -0.57
TCOF1-214ENST00000515035 ZP4Q12836 540 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 BIVMQ86UB2 503 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 RABAC1Q9UI14 185 aa11.46□□□□□ -0.57
TCOF1-214ENST00000515035 C7orf71A4D174 169 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 SMIM13P0DJ93 91 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 TCFL5Q9UL49 500 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 IGHV3OR15-7A0A075B7D8 119 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 CEACAM21Q3KPI0 293 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 KCNS1Q96KK3 526 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 QSER1Q2KHR3 1735 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 COL4A1P02462 1669 aa11.46□□□□□ -0.58
TCOF1-214ENST00000515035 NUDT3O95989 172 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 EGR1P18146 543 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 HOXA5P20719 270 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 UCNP55089 124 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 COL10A1Q03692 680 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 F2RL2O00254 374 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 AGFG2O95081 481 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 IL4P05112 153 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 Q5PR19 223 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 BHLHA15Q7RTS1 189 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-214ENST00000515035 SPAARA0A1B0GVQ0 90 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 RPL27AP46776 148 aaKnown RBP11.45□□□□□ -0.58
TCOF1-214ENST00000515035 ARF6P62330 175 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 FUT5Q11128 374 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 TMEM78Q5T7P6 136 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 SRSF12Q8WXF0 261 aaKnown RBP11.45□□□□□ -0.58
TCOF1-214ENST00000515035 LDLRAD4O15165 306 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 C8orf88P0DMB2 117 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 PRDX2P32119 198 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 GFRA1P56159 465 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 TNFRSF9Q07011 255 aa11.45□□□□□ -0.58
TCOF1-214ENST00000515035 ZCCHC14Q8WYQ9 949 aaKnown RBP11.45□□□□□ -0.58
TCOF1-214ENST00000515035 MSGN1A6NI15 193 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 VENTXO95231 258 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 MAGEA5P43359 124 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 LCN2P80188 198 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 RPRMQ9NS64 109 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 ALPK2Q86TB3 2170 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 PATE3B3GLJ2 98 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 EIF4EBP2Q13542 120 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-214ENST00000515035 ZNF645Q8N7E2 425 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 PLXNB2O15031 1838 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 LRRC37AA6NMS7 1700 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 K7N7A8 449 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 CCL4P13236 92 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 IL11P20809 199 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 RPL31P62899 125 aaKnown RBP11.44□□□□□ -0.58
TCOF1-214ENST00000515035 IZUMO4Q1ZYL8 232 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 TCF24Q7RTU0 167 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 SSBP3Q9BWW4 388 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-214ENST00000515035 TAF1LQ8IZX4 1826 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 IGLV1-36A0A0B4J1U3 117 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 ZIC3O60481 467 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 ZG16O60844 167 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 LIPFP07098 398 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 CSRP3P50461 194 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 PSG4Q00888 419 aa11.44□□□□□ -0.58
TCOF1-214ENST00000515035 TMEM187Q14656 261 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms