RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 ZNF2Q9BSG1 426 aaPredicted RBP6.22□□□□□ -1.41
CLIP1-205ENST00000514271 PARP12Q9H0J9 701 aaKnown RBP6.22□□□□□ -1.41
CLIP1-205ENST00000514271 VSIRQ9H7M9 311 aa6.22□□□□□ -1.41
CLIP1-205ENST00000514271 MTCH1Q9NZJ7 389 aa6.22□□□□□ -1.41
CLIP1-205ENST00000514271 FUT9Q9Y231 359 aa6.22□□□□□ -1.41
CLIP1-205ENST00000514271 A0A1W2PPQ1 181 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 HS3ST1O14792 307 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PIGPP57054 158 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 FNDC9Q8TBE3 224 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 ITLN2Q8WWU7 325 aaPredicted RBP6.21□□□□□ -1.42
CLIP1-205ENST00000514271 FOXN4Q96NZ1 517 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 TMEM208Q9BTX3 173 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 C1orf43Q9BWL3 253 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PLEKHF2Q9H8W4 249 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 HES4Q9HCC6 221 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 IGF2RP11717 2491 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PKD1L2Q7Z442 2459 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 VPS13AQ96RL7 3174 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 M0QZK8 103 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 SDCBPO00560 298 aaPredicted RBP6.21□□□□□ -1.42
CLIP1-205ENST00000514271 TNFSF11O14788 317 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 HSPA12AO43301 675 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 CXCL13O43927 109 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 REG1AP05451 166 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 NTF4P34130 210 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 GRB2P62993 217 aaKnown RBP6.21□□□□□ -1.42
CLIP1-205ENST00000514271 TGFBR3Q03167 851 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 ARL6IP1Q15041 203 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PRAMEF5Q5TYX0 476 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PRAMEF6Q5VXH4 476 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 BTNL3Q6UXE8 466 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 TMEM14EPQ6UXP3 125 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 UEVLDQ8IX04 471 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 NUDT10Q8NFP7 164 aa6.21□□□□□ -1.42
CLIP1-205ENST00000514271 PPP5D1E7EU14 171 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 PRB1P04280 392 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 FGF7P21781 194 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 RPL23P62829 140 aaKnown RBP6.2□□□□□ -1.42
CLIP1-205ENST00000514271 LCN2P80188 198 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 ADORA2A-AS1P86434 159 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 FOXL1Q12952 345 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 RSU1Q15404 277 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 C1orf174Q8IYL3 243 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 JAGN1Q8N5M9 183 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 OR13C9Q8NGT0 318 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 OR5P3Q8WZ94 311 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 RAB1CQ92928 201 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 PSMG3-AS1Q96PY0 264 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 BANF2Q9H503 90 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 OR6C3Q9NZP0 311 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 PEF1Q9UBV8 284 aaKnown RBP6.2□□□□□ -1.42
CLIP1-205ENST00000514271 H0Y980 276 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 TMEM250H0YL14 139 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 K7EQM0 130 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 MPPED1O15442 326 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 SOHLH1Q5JUK2 328 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 Q6ZRM9 215 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 C6orf201Q7Z4U5 140 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 EHFQ9NZC4 300 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 GOLT1BQ9Y3E0 138 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 ANKRD11Q6UB99 2663 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-205ENST00000514271 DSCAML1Q8TD84 2053 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 A0A0G2JNJ9 132 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 hCG_38984A0A1B0GV85 526 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 NKX2-6A6NCS4 301 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 VENTXO95231 258 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 SFTPDP35247 375 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 NDUFA6P56556 154 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 SLC35E4Q6ICL7 350 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 DNM1P34Q6PK57 102 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 SAXO1Q8IYX7 474 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 OR11L1Q8NGX0 322 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 APH1AQ96BI3 265 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 NECAP2Q9NVZ3 263 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 Q9UFV3 132 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 WSB1Q9Y6I7 421 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 CEP295Q9C0D2 2601 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 DYSFO75923 2080 aa6.2□□□□□ -1.42
CLIP1-205ENST00000514271 AGPAT2O15120 278 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 KBTBD11O94819 623 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 HPRT1P00492 218 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 LCATP04180 440 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 OR13C7P0DN81 318 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 FAHP16930 419 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 MSMO1Q15800 293 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 SNAI3Q3KNW1 292 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 SMIM15Q7Z3B0 74 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 FOXRED2Q8IWF2 684 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 C9orf106Q8NAJ2 232 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 MRGPRDQ8TDS7 321 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 LSM10Q969L4 123 aaKnown RBP6.19□□□□□ -1.42
CLIP1-205ENST00000514271 GNPNAT1Q96EK6 184 aaPredicted RBP6.19□□□□□ -1.42
CLIP1-205ENST00000514271 ELL3Q9HB65 397 aaPredicted RBP6.19□□□□□ -1.42
CLIP1-205ENST00000514271 Q9N2K0 584 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 IGKV1D-13A0A0B4J2D9 117 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 CLDN34H7C241 214 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 SLC33A1O00400 549 aaPredicted RBP6.19□□□□□ -1.42
CLIP1-205ENST00000514271 CSN2P05814 226 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 IGKV1-13P0DP09 117 aa6.19□□□□□ -1.42
CLIP1-205ENST00000514271 COX5AP20674 150 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms