RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 IGHV3-21A0A0B4J1V1 117 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 ISLRO14498 428 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 SUMO1P63165 101 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 ABLIM2Q6H8Q1 611 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 CLEC18BQ6UXF7 455 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 OVCH2Q7RTZ1 564 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 PLSCR4Q9NRQ2 329 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 NAT8Q9UHE5 227 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 VAX2Q9UIW0 290 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MYO18AQ92614 2054 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 TMEM262E9PQX1 116 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 IGKV1D-33P01593 117 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 IGKV1-33P01594 117 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 CX3CL1P78423 397 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MGAT2Q10469 447 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 NSUN5P1Q3KNT7 163 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 VAX1Q5SQQ9 334 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MINOS1Q5TGZ0 78 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 PQLC2Q6ZP29 291 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 PRNTQ86SH4 94 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 RNF166Q96A37 237 aaPredicted RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 ATG101Q9BSB4 218 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 TMEM140Q9NV12 185 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 CDC42EP3Q9UKI2 254 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MRPS16Q9Y3D3 137 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 CBY1Q9Y3M2 126 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 LHFPL6Q9Y693 200 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MINOS1-NBL1R4GNA1 71 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 A8MWL6 223 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 WISP3O95389 354 aaPredicted RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 MPC2O95563 127 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 HINT1P49773 126 aaPredicted RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 GPR82Q96P67 336 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 PHLDA3Q9Y5J5 127 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 DSPPQ9NZW4 1301 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 IGLV3-32A0A0A0MS00 114 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 FBLL1A6NHQ2 334 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 WNT5AP41221 380 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 RNASEKQ6P5S7 137 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 FAM216AQ8WUB2 273 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 AQP3Q92482 292 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 MARVELD3Q96A59 401 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 PHYHIPLQ96FC7 376 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 FAM103A1Q9BTL3 118 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 MCRIP2Q9BUT9 160 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 MRPL32Q9BYC8 188 aaKnown RBP3.62□□□□□ -1.83
VCAN-209ENST00000513016 LRRC37AA6NMS7 1700 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 GLIPR1P48060 266 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 SERF2P84101 59 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 SAPCD1Q5SSQ6 148 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 OR2D3Q8NGH3 330 aa3.62□□□□□ -1.83
VCAN-209ENST00000513016 SMCHD1A6NHR9 2005 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 SRSF10O75494 262 aaKnown RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 HERPUD1Q15011 391 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 OR51G1Q8NGK1 321 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 EAF1Q96JC9 268 aaPredicted RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 KBTBD11-OT1A0A1B0GTJ5 212 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 KLF7O75840 302 aaPredicted RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 ADRB1P08588 477 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 LEPP41159 167 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 LIMS1P48059 325 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 SNAI3Q3KNW1 292 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 C1orf100Q5SVJ3 147 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 RTN4RQ9BZR6 473 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 DNAJC4Q9NNZ3 241 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 PXMP4Q9Y6I8 212 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 TIMM23O14925 209 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 PAX1P15863 534 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 EWSR1Q01844 656 aaKnown RBP eCLIP3.61□□□□□ -1.83
VCAN-209ENST00000513016 CTF1Q16619 201 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 ZNF672Q499Z4 452 aaPredicted RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 TMEM255AQ5JRV8 349 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 C17orf82Q86X59 251 aaPredicted RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 ZNF383Q8NA42 475 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 C21orf62Q9NYP8 219 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 PSMB11A5LHX3 300 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 C11orf94C9JXX5 98 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 SEC11BP0C7V7 166 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 CD69Q07108 199 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 C1QTNF5Q9BXJ0 243 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 RPRMQ9NS64 109 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 PPP1R17O96001 155 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 CAMPP49913 170 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 BTN1A1Q13410 526 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 DUX3Q96PT4 197 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 TMEM191AQ9H0A3 160 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 FAM206AQ9NX38 181 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 TRBV5-5A0A0J9YX44 114 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 CENPVL1A0A0U1RR11 272 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 FCN1O00602 326 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 SMIM18P0DKX4 95 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 HTN3P15516 51 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 CCKARP32238 428 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 HIST1H1AQ02539 215 aaPredicted RBP3.61□□□□□ -1.83
VCAN-209ENST00000513016 HLA-DRB5Q30154 266 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 CLDND2Q8NHS1 167 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 VGLL1Q99990 258 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 SLC35B3Q9H1N7 401 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 ANKRD31Q8N7Z5 1873 aa3.61□□□□□ -1.83
VCAN-209ENST00000513016 PGPA6NDG6 321 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms