RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 SLC25A38Q96DW6 304 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 C5orf30Q96GV9 206 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 KLK15Q9H2R5 256 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 TPSG1Q9NRR2 321 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 NECAP2Q9NVZ3 263 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 CCL24O00175 119 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 SSX5O60225 188 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 RBBP9O75884 186 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 SCGNO76038 276 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 CA2P00918 260 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 PTHLHP12272 177 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 DTYMKP23919 212 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 MYCNOSP40205 109 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 CX3CL1P78423 397 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 CFHR3Q02985 330 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 TIMM50Q3ZCQ8 353 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 PDPNQ86YL7 162 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 H1FOOQ8IZA3 346 aaPredicted RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 BVESQ8NE79 360 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 GRPEL2Q8TAA5 225 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 FLYWCH2Q96CP2 140 aaKnown RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 RCC1LQ96I51 464 aaKnown RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 HARBI1Q96MB7 349 aa11.14□□□□□ -0.63
HOXC9-202ENST00000504557 TSNAXQ99598 290 aaKnown RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 AURKAIP1Q9NWT8 199 aaPredicted RBP11.14□□□□□ -0.63
HOXC9-202ENST00000504557 MEIS3P1A6NDR6 274 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 SHOXO15266 292 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 PSMB8P28062 276 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 PITPNAQ00169 270 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 CBX3Q13185 183 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 OR2B11Q5JQS5 317 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 UNQ5815/PRO19632Q6UWF5 114 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 PPP1R27Q86WC6 154 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 YIPF6Q96EC8 236 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 GNB4Q9HAV0 340 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.13□□□□□ -0.63
HOXC9-202ENST00000504557 ETV7Q9Y603 341 aa11.13□□□□□ -0.63
HOXC9-202ENST00000504557 PRKDCP78527 4128 aaKnown RBP11.13□□□□□ -0.63
HOXC9-202ENST00000504557 TUSC2O75896 110 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 CNIH1O95406 144 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 PPIFP30405 207 aaKnown RBP11.12□□□□□ -0.63
HOXC9-202ENST00000504557 RPS19P39019 145 aaKnown RBP11.12□□□□□ -0.63
HOXC9-202ENST00000504557 CDX1P47902 265 aaPredicted RBP11.12□□□□□ -0.63
HOXC9-202ENST00000504557 LUMP51884 338 aaPredicted RBP11.12□□□□□ -0.63
HOXC9-202ENST00000504557 ARPC4P59998 168 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 RTL8BQ17RB0 113 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 ZNF660Q6AZW8 331 aaPredicted RBP11.12□□□□□ -0.63
HOXC9-202ENST00000504557 GVQW1Q8N7I0 195 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 DPF1Q92782 380 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 MS4A10Q96PG2 267 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 P2RX4Q99571 388 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 TOLLIPQ9H0E2 274 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 DIABLOQ9NR28 239 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 ZNF355PQ9NSJ1 428 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 TNCP24821 2201 aa11.12□□□□□ -0.63
HOXC9-202ENST00000504557 CRYZL1O95825 349 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 SLC6A1P30531 599 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 RAB9AP51151 201 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 PJVKQ0ZLH3 352 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 FXYD3Q14802 87 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 SRSF7Q16629 238 aaKnown RBP eCLIP11.11□□□□□ -0.63
HOXC9-202ENST00000504557 ACTBL2Q562R1 376 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 CNIH2Q6PI25 160 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 Q6ZS49 121 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 LFNGQ8NES3 379 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 OR11H1Q8NG94 326 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 C4orf3Q8WVX3 66 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 ARPC1AQ92747 370 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 RNF5Q99942 180 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 DCUN1D5Q9BTE7 237 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 ALX4Q9H161 411 aaPredicted RBP11.11□□□□□ -0.63
HOXC9-202ENST00000504557 DCSTAMPQ9H295 470 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 ANXA10Q9UJ72 324 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 SPATA2Q9UM82 520 aa11.11□□□□□ -0.63
HOXC9-202ENST00000504557 FOXA2Q9Y261 457 aaPredicted RBP11.11□□□□□ -0.63
HOXC9-202ENST00000504557 IGKV1D-13A0A0B4J2D9 117 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 LINC00473A8K010 186 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 SOX15O60248 233 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 DUS4LO95620 317 aaKnown RBP11.1□□□□□ -0.63
HOXC9-202ENST00000504557 DIRAS3O95661 229 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 IGHV3-11P01762 117 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 CTXN2P0C2S0 81 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 APELAP0DMC3 54 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 IGKV1-13P0DP09 117 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 EGR2P11161 476 aaPredicted RBP11.1□□□□□ -0.63
HOXC9-202ENST00000504557 KRTAP10-11P60412 298 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 VBP1P61758 197 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 NCS1P62166 190 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 TAGLNQ01995 201 aaKnown RBP11.1□□□□□ -0.63
HOXC9-202ENST00000504557 TMEM267Q0VDI3 215 aaPredicted RBP11.1□□□□□ -0.63
HOXC9-202ENST00000504557 IDO2Q6ZQW0 420 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 REC114Q7Z4M0 266 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 ZNF645Q8N7E2 425 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 SAMD12Q8N8I0 201 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 ZNF491Q8N8L2 437 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 RNF152Q8N8N0 203 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 BEST4Q8NFU0 473 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 FUNDC2Q9BWH2 189 aa11.1□□□□□ -0.63
HOXC9-202ENST00000504557 VSIG4Q9Y279 399 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms