RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CCL11P51671 97 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HBG1P69891 147 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HBG2P69892 147 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 USF2Q15853 346 aaPredicted RBP13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF674Q2M3X9 581 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CDPF1Q6NVV7 123 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OPN3Q9H1Y3 402 aaPredicted RBP13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CACNA1BQ00975 2339 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NBASA2RRP1 2371 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IQCF6A8MYZ5 107 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 B4DEV8 164 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 P0C879 139 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CD46P15529 392 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IDH3GP51553 393 aaPredicted RBP13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PSG7Q13046 419 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 EIF4EBP1Q13541 118 aaPredicted RBP13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TMEM41BQ5BJD5 291 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SAPCD1Q5SSQ6 148 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TMEM14EPQ6UXP3 125 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 UNQ6494/PRO21346Q6UXR6 183 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SPNS3Q6ZMD2 512 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR1L1Q8NH94 360 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RBKSQ9H477 322 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HES4Q9HCC6 221 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 DOK5Q9P104 306 aa13.5□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 FAM90A26D6RGX4 464 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RAMP3O60896 148 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HAND1O96004 215 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GRPP07492 148 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RAC2P15153 192 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RPL30P62888 115 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GAMTQ14353 236 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF610Q8N9Z0 462 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 DTD1Q8TEA8 209 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TAF15Q92804 592 aaKnown RBP eCLIP13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 FER1L6-AS2Q96M78 137 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NCOR1P1Q9H4R4 102 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CDH20Q9HBT6 801 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SEC14L6B5MCN3 397 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IGKV1D-33P01593 117 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IGKV1-33P01594 117 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NDUFA6P56556 154 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HOXA4Q00056 320 aaPredicted RBP13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SLC38A11Q08AI6 406 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 C11orf53Q8IXP5 236 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF645Q8N7E2 425 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NOL4LQ96MY1 436 aaPredicted RBP13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZDHHC11Q9H8X9 412 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SDF2L1Q9HCN8 221 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 COL12A1Q99715 3063 aa13.49□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 C12orf77C9JDV5 145 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CYB5BO43169 146 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PTBP3O95758 552 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 LINC00614P0C842 121 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MPV17P39210 176 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR3A1P47881 315 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RND2P52198 227 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 BRWD1-AS2P59051 145 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GABRA6Q16445 453 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 P2RX4Q99571 388 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NDUFAF3Q9BU61 184 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HSPB7Q9UBY9 170 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 UBE2L5PA0A1B0GUS4 154 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RNF212BA8MTL3 300 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 WNT9BO14905 357 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BKO60814 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BJP06899 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BOP23527 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BBP33778 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ELLP55199 621 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BDP58876 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BCP62807 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PNRC1Q12796 327 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GAGE1Q13065 139 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MRPL49Q13405 166 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST2H2BEQ16778 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MRGPRGQ86SM5 289 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR52L2PQ8NGH6 319 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR5R1Q8NH85 324 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BHQ93079 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GMPPAQ96IJ6 420 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BNQ99877 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 HIST1H2BMQ99879 126 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TMEM242Q9NWH2 141 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 VAX2Q9UIW0 290 aa13.48□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 USF3Q68DE3 2245 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TMEM30CPA0ZSE6 113 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MAP1LC3B2A6NCE7 125 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MLNRO43193 412 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 LYZL6O75951 148 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CYB5R3P00387 301 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TRGC2P03986 189 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PMS2P11Q13670 270 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR8G2PQ6IF36 304 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF826PQ6ZT77 177 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CENPVQ7Z7K6 275 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RPP25LQ8N5L8 163 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PINX1Q96BK5 328 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 MAP1LC3BQ9GZQ8 125 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms