RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 TMEM86BQ8N661 226 aa9.54□□□□□ -0.88
CUX1-210ENST00000497815 MARCH1Q8TCQ1 289 aa9.54□□□□□ -0.88
CUX1-210ENST00000497815 TCTEX1D2Q8WW35 142 aa9.54□□□□□ -0.88
CUX1-210ENST00000497815 PRRT1Q99946 306 aa9.54□□□□□ -0.88
CUX1-210ENST00000497815 MXRA5Q9NR99 2828 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 FAM90A9PA6NNJ1 464 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 LINC00473A8K010 186 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 H0YJW9 148 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 CLDN34H7C241 214 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 TRIM77I1YAP6 450 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 CHST1O43916 411 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 PEX14O75381 377 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 APOA2P02652 100 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 RLN1P04808 185 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 RNASE1P07998 156 aaKnown RBP9.53□□□□□ -0.88
CUX1-210ENST00000497815 DUTP33316 252 aaKnown RBP9.53□□□□□ -0.88
CUX1-210ENST00000497815 RPL30P62888 115 aaKnown RBP9.53□□□□□ -0.88
CUX1-210ENST00000497815 HABP2Q14520 560 aaPredicted RBP9.53□□□□□ -0.88
CUX1-210ENST00000497815 LPCAT3Q6P1A2 487 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 KCTD9Q7L273 389 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 SLC38A6Q8IZM9 456 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 BVESQ8NE79 360 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 OR5AN1Q8NGI8 311 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 OR13C8Q8NGS7 320 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 OR2T10Q8NGZ9 312 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 TAF15Q92804 592 aaKnown RBP eCLIP9.53□□□□□ -0.88
CUX1-210ENST00000497815 BORCS5Q969J3 196 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 MRGPRFQ96AM1 343 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 EAF1Q96JC9 268 aaPredicted RBP9.53□□□□□ -0.88
CUX1-210ENST00000497815 AKR1E2Q96JD6 320 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 RSRP1Q9BUV0 290 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 SLC35D1Q9NTN3 355 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 SCP2D1Q9UJQ7 156 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 PITPNC1Q9UKF7 332 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 WASHC3Q9Y3C0 194 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 NAV3Q8IVL0 2385 aa9.53□□□□□ -0.88
CUX1-210ENST00000497815 FAM181BA6NEQ2 426 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 CENPXA8MT69 81 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 GPR31O00270 319 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 FCGR3BO75015 233 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 UPK1BO75841 260 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 MOSP00540 346 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 MC5RP33032 325 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 CCR6P51684 374 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 UCP3P55916 312 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 EIF4EBP1Q13541 118 aaPredicted RBP9.52□□□□□ -0.89
CUX1-210ENST00000497815 MSMO1Q15800 293 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 ABCA11PQ4W5N1 156 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 C16orf87Q6PH81 154 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 ZNF66Q6ZN08 573 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 THNSL2Q86YJ6 484 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 CMTM1Q8IZ96 169 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 ZBTB34Q8NCN2 500 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 OR51H1Q8NH63 302 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 ADTRPQ96IZ2 230 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 RITA1Q96K30 269 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 TSC22D3Q99576 134 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 HSD17B10Q99714 261 aaKnown RBP9.52□□□□□ -0.89
CUX1-210ENST00000497815 SLC25A33Q9BSK2 321 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 PRELID3BQ9Y3B1 194 aa9.52□□□□□ -0.89
CUX1-210ENST00000497815 NCBP2LA6PVI3 153 aaKnown RBP9.51□□□□□ -0.89
CUX1-210ENST00000497815 PLA2G10O15496 165 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 PGLYRP1O75594 196 aaPredicted RBP9.51□□□□□ -0.89
CUX1-210ENST00000497815 IGKV1-16P04430 117 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 CRYBA1P05813 215 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 CNTFRP26992 372 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 S100GP29377 79 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 CATR1Q13166 79 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 CBX3Q13185 183 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 EBI3Q14213 229 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 RTL8BQ17RB0 113 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 DHRS7BQ6IAN0 325 aaPredicted RBP9.51□□□□□ -0.89
CUX1-210ENST00000497815 PDPNQ86YL7 162 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 ZFAND1Q8TCF1 268 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 DEDD2Q8WXF8 326 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 DDB2Q92466 427 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 RBM14Q96PK6 669 aaKnown RBP9.51□□□□□ -0.89
CUX1-210ENST00000497815 SLC2A9Q9NRM0 540 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 SLC2A8Q9NY64 477 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 C14orf166Q9Y224 244 aaKnown RBP9.51□□□□□ -0.89
CUX1-210ENST00000497815 CUBNO60494 3623 aa9.51□□□□□ -0.89
CUX1-210ENST00000497815 NAP1L6A6NFF2 107 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 SH2D7A6NKC9 451 aaPredicted RBP9.5□□□□□ -0.89
CUX1-210ENST00000497815 LYRM1O43325 122 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 OR2F2O95006 317 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 CRYZL1O95825 349 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 ECI1P42126 302 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 F2RL1P55085 397 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 PIGPP57054 158 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 RPS16P62249 146 aaKnown RBP9.5□□□□□ -0.89
CUX1-210ENST00000497815 IFITM3Q01628 133 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 MMDQ15546 238 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 LIAT1Q6ZQX7 453 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 TBC1D26Q86UD7 250 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 Q8N6K4 173 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 FLYWCH2Q96CP2 140 aaKnown RBP9.5□□□□□ -0.89
CUX1-210ENST00000497815 C7orf50Q9BRJ6 194 aaKnown RBP9.5□□□□□ -0.89
CUX1-210ENST00000497815 RAB18Q9NP72 206 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 COPZ2Q9P299 210 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 VSIG4Q9Y279 399 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms