RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 HS3ST6Q96QI5 342 aa6.96□□□□□ -1.3
USP54-215ENST00000497106 TOLLIPQ9H0E2 274 aa6.96□□□□□ -1.3
USP54-215ENST00000497106 C5orf42Q9H799 3197 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 CACNA1GO43497 2377 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 SMCO3A2RU48 225 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 LINC00862A6NCI5 91 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 PRSS47A8MTI9 375 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 DEDDO75618 318 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 LGALS7P47929 136 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 ZNF660Q6AZW8 331 aaPredicted RBP6.95□□□□□ -1.3
USP54-215ENST00000497106 OR4A5Q8NH83 315 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 OSR1Q8TAX0 266 aaPredicted RBP6.95□□□□□ -1.3
USP54-215ENST00000497106 PBDC1Q9BVG4 233 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 INSIG2Q9Y5U4 225 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 PIEZO1Q92508 2521 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 CLEC18AA5D8T8 446 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 FABP1P07148 127 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 TAS2R30P59541 319 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 HES1Q14469 280 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 BAP18Q8IXM2 172 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 CLEC18CQ8NCF0 446 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 ST8SIA2Q92186 375 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 LHX4Q969G2 390 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 PCGF1Q9BSM1 259 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 TMEM133Q9H2Q1 129 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.95□□□□□ -1.3
USP54-215ENST00000497106 HBE1P02100 147 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 HTR1DP28221 377 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 MEOX2P50222 304 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 WDR25Q64LD2 544 aaPredicted RBP6.95□□□□□ -1.3
USP54-215ENST00000497106 PCSK4Q6UW60 755 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 C8orf31Q8N9H6 132 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 TMEM68Q96MH6 324 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 TP53RKQ96S44 253 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 COA4Q9NYJ1 87 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 METRNQ9UJH8 293 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 IGKV1D-13A0A0B4J2D9 117 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 OOSP1A8MZH6 123 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 IGKV1-13P0DP09 117 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 SLC25A16P16260 332 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 CDKN1AP38936 164 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 RPL35P42766 123 aaKnown RBP6.95□□□□□ -1.3
USP54-215ENST00000497106 DCAF12L2Q5VW00 463 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 SSX9Q7RTT3 188 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 AQP10Q96PS8 301 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 FAM96BQ9Y3D0 163 aa6.95□□□□□ -1.3
USP54-215ENST00000497106 RPS10-NUDT3A0A1W2PQS6 291 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 J3QKU1 62 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 NUPL2O15504 423 aaKnown RBP6.94□□□□□ -1.3
USP54-215ENST00000497106 MBP02144 154 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 H2BFSP57053 126 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 SPCS3P61009 180 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 HARBI1Q96MB7 349 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 SHARPINQ9H0F6 387 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 ARG1P05089 322 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 GRNP28799 593 aaKnown RBP6.94□□□□□ -1.3
USP54-215ENST00000497106 HERPUD1Q15011 391 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 ETFRF1Q6IPR1 90 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 ZCCHC24Q8N2G6 241 aaKnown RBP6.94□□□□□ -1.3
USP54-215ENST00000497106 OR4C13Q8NGP0 309 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 SMIM3Q9BZL3 60 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 ZNF581Q9P0T4 197 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 INTS1Q8N201 2190 aaKnown RBP6.94□□□□□ -1.3
USP54-215ENST00000497106 UMAD1C9J7I0 102 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 MBPP02686 304 aaPredicted RBP6.94□□□□□ -1.3
USP54-215ENST00000497106 SCGB2A2Q13296 93 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 FGFRL1Q8N441 504 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 KIR3DL3Q8N743 410 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 SLC35E1Q96K37 410 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 KPTNQ9Y664 436 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 WSB1Q9Y6I7 421 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 ARHGAP21Q5T5U3 1957 aa6.94□□□□□ -1.3
USP54-215ENST00000497106 DBX1A6NMT0 343 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 IGHV2-70P01814 119 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 USF1P22415 310 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 COMPP49747 757 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 OR2B8PP59922 312 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 MSMPQ1L6U9 139 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 SPANXN5Q5MJ07 72 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 TMEM200BQ69YZ2 307 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 LINC00311Q8N616 119 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 LFNGQ8NES3 379 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 GPR146Q96CH1 333 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 GSX2Q9BZM3 304 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 J3QR06 171 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 S100A9P06702 114 aaKnown RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 COL8A2P25067 703 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 SULT1A1P50225 295 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 COTL1Q14019 142 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 DTD1Q8TEA8 209 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 NARS2Q96I59 477 aaKnown RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 RP1L1Q8IWN7 2480 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 G6PCP35575 357 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 UBE2KP61086 200 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 SP5Q6BEB4 398 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 TEX261Q6UWH6 196 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 HSD17B13Q7Z5P4 300 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 OR1L6Q8NGR2 347 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 OR1L8Q8NGR8 309 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms