RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	SLC38A6	Q8IZM9	456 aa		11.69	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR2T10	Q8NGZ9	312 aa		11.69	□□□□□ -0.54
BRCA1-223	ENST00000494123	ADTRP	Q96IZ2	230 aa		11.69	□□□□□ -0.54
BRCA1-223	ENST00000494123	HSD17B10	Q99714	261 aa	Known RBP	11.69	□□□□□ -0.54
BRCA1-223	ENST00000494123	NF1	P21359	2839 aa		11.69	□□□□□ -0.54
BRCA1-223	ENST00000494123	JMJD1C	Q15652	2540 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	GPR31	O00270	319 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	TMEM11	P17152	192 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	GNRHR	P30968	328 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	DUT	P33316	252 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	ECI1	P42126	302 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	UCP3	P55916	312 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	CBX3	Q13185	183 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	HNF4G	Q14541	408 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	ABCA11P	Q4W5N1	156 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	LIAT1	Q6ZQX7	453 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	TMEM219	Q86XT9	240 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	SLC2A8	Q9NY64	477 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	WASHC3	Q9Y3C0	194 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	NAP1L6	A6NFF2	107 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	FAM90A9P	A6NNJ1	464 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123		H0YJW9	148 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	MOS	P00540	346 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	RNASE1	P07998	156 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	LINC00205	P59089	165 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	TAGLN	Q01995	201 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	CATR1	Q13166	79 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	ZNF66	Q6ZN08	573 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	ZNF383	Q8NA42	475 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	BVES	Q8NE79	360 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR5AN1	Q8NGI8	311 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	ZFAND1	Q8TCF1	268 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	MARCH1	Q8TCQ1	289 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	TCTEX1D2	Q8WW35	142 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	TSC22D3	Q99576	134 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	C7orf50	Q9BRJ6	194 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	RSRP1	Q9BUV0	290 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	RAB18	Q9NP72	206 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	SLC35D1	Q9NTN3	355 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123	PRELID3B	Q9Y3B1	194 aa		11.68	□□□□□ -0.54
BRCA1-223	ENST00000494123		A6NDX4	124 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	LINC00473	A8K010	186 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	GPR137B	O60478	399 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	SRSF2	Q01130	221 aa	Known RBP	11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	RTL8B	Q17RB0	113 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	PHLDA2	Q53GA4	152 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	C16orf87	Q6PH81	154 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	PDPN	Q86YL7	162 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	ZNF486	Q96H40	463 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	EAF1	Q96JC9	268 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	GPHA2	Q96T91	129 aa		11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	C14orf166	Q9Y224	244 aa	Known RBP	11.67	□□□□□ -0.54
BRCA1-223	ENST00000494123	RNF212B	A8MTL3	300 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	UPK1B	O75841	260 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	RLN1	P04808	185 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	CRYBA1	P05813	215 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	RRAS	P10301	218 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	EBI3	Q14213	229 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	SURF2	Q15527	256 aa	Predicted RBP	11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	CCBE1	Q6UXH8	406 aa	Predicted RBP	11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	PRIMA1	Q86XR5	153 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR13C8	Q8NGS7	320 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	SCGB3A2	Q96PL1	93 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	SLC25A33	Q9BSK2	321 aa		11.66	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR2F2	O95006	317 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	PI3	P19957	117 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	RPL30	P62888	115 aa	Known RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	EIF4EBP1	Q13541	118 aa	Predicted RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	FBLN7	Q53RD9	439 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR2B11	Q5JQS5	317 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	DHRS7B	Q6IAN0	325 aa	Predicted RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	C16orf82	Q7Z2V1	217 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	POC5	Q8NA72	575 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	OR51H1	Q8NH63	302 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	MRGPRF	Q96AM1	343 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	FLYWCH2	Q96CP2	140 aa	Known RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	RBMXL1	Q96E39	390 aa	Known RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	RBM14	Q96PK6	669 aa	Known RBP	11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	SLC2A9	Q9NRM0	540 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	COPZ2	Q9P299	210 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	ZFHX3	Q15911	3703 aa		11.65	□□□□□ -0.54
BRCA1-223	ENST00000494123	CUBN	O60494	3623 aa		11.65	□□□□□ -0.55
BRCA1-223	ENST00000494123	FAM181B	A6NEQ2	426 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	NCBP2L	A6PVI3	153 aa	Known RBP	11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	LYRM1	O43325	122 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	CHST1	O43916	411 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	FCGR3B	O75015	233 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	PGLYRP1	O75594	196 aa	Predicted RBP	11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	CTSD	P07339	412 aa	Predicted RBP	11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	KIR2DS2	P43631	304 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	CCDC71L	Q8N9Z2	235 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	DDB2	Q92466	427 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	C1RL	Q9NZP8	487 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	MOB4	Q9Y3A3	225 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	PEX14	O75381	377 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	CRYZL1	O95825	349 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	IGKV1-16	P04430	117 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	CCR6	P51684	374 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	PIGP	P57054	158 aa		11.64	□□□□□ -0.55
BRCA1-223	ENST00000494123	RPL15	P61313	204 aa	Known RBP	11.64	□□□□□ -0.55

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