RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 IGHV3-43A0A0B4J1X8 118 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 OR5F1O95221 314 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 WISP3O95389 354 aaPredicted RBP2.9□□□□□ -1.94
VPS13A-212ENST00000493341 TGFBR2P37173 567 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 HSPA9P38646 679 aaKnown RBP2.9□□□□□ -1.94
VPS13A-212ENST00000493341 CAPZBP47756 277 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 SNAP25P60880 206 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 FABP5Q01469 135 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 ZNF616Q08AN1 781 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 ZNF816Q0VGE8 651 aaPredicted RBP2.9□□□□□ -1.94
VPS13A-212ENST00000493341 SPA17Q15506 151 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 Q6P435 159 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 SPANXA2-OT1Q8N9U9 137 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 Q8WTZ3 238 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 KCTD4Q8WVF5 259 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 OR2V2Q96R30 315 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 GABARAPL1Q9H0R8 117 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 MED28Q9H204 178 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 TXNIPQ9H3M7 391 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 KCNIP2Q9NS61 270 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 DNAJC12Q9UKB3 198 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 CPDO75976 1380 aa2.9□□□□□ -1.94
VPS13A-212ENST00000493341 CPSF1Q10570 1443 aaKnown RBP2.9□□□□□ -1.94
VPS13A-212ENST00000493341 NFAT5O94916 1531 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 RREB1Q92766 1687 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 LTN1O94822 1766 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 OR5H14A6NHG9 310 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 C4orf51C9J302 202 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 D6RAR5 112 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 MRASO14807 208 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 LTAP01374 205 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 MUC1P15941 1255 aaPredicted RBP2.9□□□□□ -1.95
VPS13A-212ENST00000493341 CTBP2P56545 445 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 OR4D2P58180 307 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 SPCS3P61009 180 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 HERVK_113P63121 156 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 GLO1Q04760 184 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 OR2F1Q13607 317 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 EBPQ15125 230 aaKnown RBP2.9□□□□□ -1.95
VPS13A-212ENST00000493341 MMDQ15546 238 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 HIST2H3AQ71DI3 136 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 FER1L6-AS1Q8NA97 138 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 DIRAS2Q96HU8 199 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 PRAP1Q96NZ9 151 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF586Q9NXT0 402 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF492Q9P255 531 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 KLK12Q9UKR0 248 aa2.9□□□□□ -1.95
VPS13A-212ENST00000493341 MYOM1P52179 1685 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 ANKRD26Q9UPS8 1709 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 KIF20BQ96Q89 1820 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 TP53BP1Q12888 1972 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-212ENST00000493341 TRAV8-1A0A0A6YYK1 113 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 IGHV3-21A0A0B4J1V1 117 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 LEUTXA8MZ59 168 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 IGLL5B9A064 214 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 BET1O15155 118 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 UCHL3P15374 230 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 YLPM1P49750 1951 aaKnown RBP2.89□□□□□ -1.95
VPS13A-212ENST00000493341 CDK9P50750 372 aaKnown RBP2.89□□□□□ -1.95
VPS13A-212ENST00000493341 FUT5Q11128 374 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 AKIRIN2Q53H80 203 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 SFXN4Q6P4A7 337 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 PPIP5K1Q6PFW1 1433 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 SLC25A34Q6PIV7 304 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 TBPL2Q6SJ96 375 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 UNQ9165/PRO28630Q6UXU0 137 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 CYHR1Q6ZMK1 362 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 CCDC121Q6ZUS5 278 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 S100A7AQ86SG5 101 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 NT5DC3Q86UY8 548 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 RTN4IP1Q8WWV3 396 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-212ENST00000493341 TMA16Q96EY4 203 aaKnown RBP2.89□□□□□ -1.95
VPS13A-212ENST00000493341 ANKRD36BP1Q96IX9 119 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 C9orf16Q9BUW7 83 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 TMEM109Q9BVC6 243 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 C11orf49Q9H6J7 331 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 CD163L1Q9NR16 1453 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 VPS29Q9UBQ0 182 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 LRRC37A3O60309 1634 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 LRP5O75197 1615 aa2.89□□□□□ -1.95
VPS13A-212ENST00000493341 DISP2A7MBM2 1401 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ROCK2O75116 1388 aaKnown RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CNIH1O95406 144 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 TRGV3P03979 118 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 MPV17P39210 176 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 MAP2K4P45985 399 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 RPS24P62847 133 aaKnown RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 TSPAN31Q12999 210 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 HIST3H3Q16695 136 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 NEGR1Q7Z3B1 354 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF567Q8N184 647 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 KRTCAP2Q8N6L1 136 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 UBL4BQ8N7F7 174 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 OR11G2Q8NGC1 345 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ABHD14BQ96IU4 210 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 TRIB3Q96RU7 358 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 HES4Q9HCC6 221 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 FKBP14Q9NWM8 211 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 OPN4Q9UHM6 478 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 KIAA1671Q9BY89 1806 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms