RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 IRF2P14316 349 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 CCL8P80075 99 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 PEA15Q15121 130 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 ADAM5Q6NVV9 412 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 H2BFWTQ7Z2G1 175 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 LFNGQ8NES3 379 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 CD300LFQ8TDQ1 290 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 ATXN7O15265 892 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 IGHV3-7P01780 117 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 NPBWR1P48145 328 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 HBG1P69891 147 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 HBG2P69892 147 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 UTF1Q5T230 341 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 TMEM14EPQ6UXP3 125 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 TCF23Q7RTU1 214 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 THNSL2Q86YJ6 484 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 FAM216BQ8N7L0 139 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 WFIKKN1Q96NZ8 548 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 FAM234AQ9H0X4 552 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 KBTBD11-OT1A0A1B0GTJ5 212 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 A0A1B0GV50 99 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 SLC31A2O15432 143 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 TNFRSF1AP19438 455 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 PPT1P50897 306 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 RPL39P5Q59GN2 51 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 SLC25A24Q6NUK1 477 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 SPSB3Q6PJ21 355 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 VKORC1Q9BQB6 163 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 GFOD1Q9NXC2 390 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 CLN8Q9UBY8 286 aa17.46■□□□□ 0.39
CCDC88B-208ENST00000492980 MARCH11A6NNE9 402 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 M0R1X1 148 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 ITGB1BP1O14713 200 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 AKR1C8PQ5T2L2 129 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 EIF5A2Q9GZV4 153 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 RAB9BQ9NP90 201 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 FBXO7Q9Y3I1 522 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 TRGV10A0A0A0MS01 117 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 GPR37O15354 613 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 PPIHO43447 177 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 FCGR3BO75015 233 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 ZCCHC24Q8N2G6 241 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 R3HDM4Q96D70 268 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 RAXQ9Y2V3 346 aa17.45■□□□□ 0.38
CCDC88B-208ENST00000492980 A0A1B0GW64 132 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 SP5Q6BEB4 398 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 LILRB2Q8N423 598 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 SCGB1C1Q8TD33 95 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 LEAP2Q969E1 77 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 OR4C12Q96R67 309 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 PBDC1Q9BVG4 233 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 H2AFB1P0C5Y9 115 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 UCNP55089 124 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 CCL20P78556 96 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 DPPA3Q6W0C5 159 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 RSG1Q9BU20 258 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 KPTNQ9Y664 436 aa17.44■□□□□ 0.38
CCDC88B-208ENST00000492980 HPRT1P00492 218 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 ATF4P18848 351 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 RAB7AP51149 207 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 SLC38A11Q08AI6 406 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 LRRC75BQ2VPJ9 315 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 TMEM88Q6PEY1 159 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 DTD1Q8TEA8 209 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 ZDHHC16Q969W1 377 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 GAB2Q9UQC2 676 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 PCNX1Q96RV3 2341 aa17.43■□□□□ 0.38
CCDC88B-208ENST00000492980 TRGV8A0A0C4DH27 118 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 RBFOX2O43251 390 aaKnown RBP eCLIP17.42■□□□□ 0.388e-13■□□□□ 10.4
CCDC88B-208ENST00000492980 ZG16O60844 167 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 TLE1Q04724 770 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 CT45A1Q5HYN5 189 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 DHRS7BQ6IAN0 325 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 C1orf229Q6ZS94 237 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 CT45A3Q8NHU0 189 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 PARD6GQ9BYG4 376 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 NBEAQ8NFP9 2946 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 BTBD17A6NE02 478 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 OR8U8P0C7N1 319 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 OR9G9P0C7N8 305 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 CBLN2Q8IUK8 224 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 CLRN3Q8NCR9 226 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 CORO2AQ92828 525 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 PSMG3Q9BT73 122 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 HIPK2Q9H2X6 1198 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 LINC00574Q9H8X3 128 aa17.42■□□□□ 0.38
CCDC88B-208ENST00000492980 A0A1W2PPE3 182 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 ZNF729A6NN14 1252 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 SHISA9B4DS77 424 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 RBMXL2O75526 392 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 OR8G2PQ6IF36 304 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 DMRTC2Q8IXT2 367 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 DDB2Q92466 427 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 WDR61Q9GZS3 305 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 SAP30LQ9HAJ7 183 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 NGBQ9NPG2 151 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 IDI2-AS1Q9NZ38 188 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 NKX6-3A6NJ46 265 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 TLE4Q04727 773 aa17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 ZNF439Q8NDP4 499 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms