RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SPARTQ8N0X7 666 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 TCTEX1D1Q8N7M0 179 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 OR10J5Q8NHC4 309 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 CASTOR1Q8WTX7 329 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 TSNAXQ99598 290 aaKnown RBP17.86■□□□□ 0.45
COL9A3-213ENST00000489045 FAM103A1Q9BTL3 118 aaKnown RBP17.86■□□□□ 0.45
COL9A3-213ENST00000489045 OR2D2Q9H210 308 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 NUBP2Q9Y5Y2 271 aa17.86■□□□□ 0.45
COL9A3-213ENST00000489045 TRBV6-7A0A0A0MS04 114 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 METTL21EPA6NDL7 271 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 SPDEFO95238 335 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 CA2P00918 260 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 OR8U9P0C7N5 309 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 TMEM267Q0VDI3 215 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-213ENST00000489045 PPP1R27Q86WC6 154 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 ALX4Q9H161 411 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-213ENST00000489045 TPSG1Q9NRR2 321 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 SLC35D1Q9NTN3 355 aa17.85■□□□□ 0.45
COL9A3-213ENST00000489045 DNAH9Q9NYC9 4486 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 DIRAS3O95661 229 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 CD69Q07108 199 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 ARFRP1Q13795 201 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 ZNF260Q3ZCT1 412 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 C11orf87Q6NUJ2 197 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 ZNF562Q6V9R5 426 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 FLYWCH2Q96CP2 140 aaKnown RBP17.84■□□□□ 0.45
COL9A3-213ENST00000489045 B9D2Q9BPU9 175 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 ATG5Q9H1Y0 275 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 Q9H521 79 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 TXNL4BQ9NX01 149 aaKnown RBP17.84■□□□□ 0.45
COL9A3-213ENST00000489045 SCOCQ9UIL1 159 aa17.84■□□□□ 0.45
COL9A3-213ENST00000489045 SLC25A17O43808 307 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 TALDO1P37837 337 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 DCTN2Q13561 401 aaKnown RBP17.83■□□□□ 0.44
COL9A3-213ENST00000489045 AKIRIN2Q53H80 203 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 ACTBL2Q562R1 376 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 UNQ5815/PRO19632Q6UWF5 114 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 LFNGQ8NES3 379 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 FCGR1BQ92637 280 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 C5orf30Q96GV9 206 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 PRR25Q96S07 402 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 SDHAF2Q9NX18 166 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 ELF5Q9UKW6 265 aaPredicted RBP17.83■□□□□ 0.44
COL9A3-213ENST00000489045 STUB1Q9UNE7 303 aa17.83■□□□□ 0.44
COL9A3-213ENST00000489045 FGF9P31371 208 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-213ENST00000489045 ECI1P42126 302 aa17.82■□□□□ 0.44
COL9A3-213ENST00000489045 PYHIN1Q6K0P9 492 aa17.82■□□□□ 0.44
COL9A3-213ENST00000489045 ARPC1AQ92747 370 aa17.82■□□□□ 0.44
COL9A3-213ENST00000489045 GINS4Q9BRT9 223 aa17.82■□□□□ 0.44
COL9A3-213ENST00000489045 NOTOA8MTQ0 251 aa17.81■□□□□ 0.44
COL9A3-213ENST00000489045 LGALS1P09382 135 aaKnown RBP17.81■□□□□ 0.44
COL9A3-213ENST00000489045 VAX1Q5SQQ9 334 aa17.81■□□□□ 0.44
COL9A3-213ENST00000489045 DCUN1D4Q92564 292 aa17.81■□□□□ 0.44
COL9A3-213ENST00000489045 RBM7Q9Y580 266 aaKnown RBP17.81■□□□□ 0.44
COL9A3-213ENST00000489045 IGKV1D-8A0A087WSZ0 117 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 ARPC1BO15143 372 aaKnown RBP17.8■□□□□ 0.44
COL9A3-213ENST00000489045 IGLV2-23P01705 113 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 FXYD3Q14802 87 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 ARL6IP1Q15041 203 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 SRSF7Q16629 238 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL9A3-213ENST00000489045 Q6ZS49 121 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 GRPEL2Q8TAA5 225 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 MS4A10Q96PG2 267 aa17.8■□□□□ 0.44
COL9A3-213ENST00000489045 YTHDF1Q9BYJ9 559 aaKnown RBP17.8■□□□□ 0.44
COL9A3-213ENST00000489045 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.8■□□□□ 0.444e-7■■□□□ 13.3
COL9A3-213ENST00000489045 IGHV4OR15-8A0A075B7B6 117 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 A0A087WW49 117 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 LINC01619G3V211 115 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 OVOL1O14753 267 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 DTYMKP23919 212 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 SLURP1P55000 103 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 TPPP2P59282 170 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 CDNFQ49AH0 187 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 H1FOOQ8IZA3 346 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-213ENST00000489045 HARBI1Q96MB7 349 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 DAPK2Q9UIK4 370 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 SSR3Q9UNL2 185 aa17.79■□□□□ 0.44
COL9A3-213ENST00000489045 IGHV3-11P01762 117 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 LGALS7P47929 136 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 INSL3P51460 131 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 SSBP2P81877 361 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-213ENST00000489045 PJVKQ0ZLH3 352 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 CBX3Q13185 183 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 ZNF773Q6PK81 442 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 TPRA1Q86W33 373 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 BVESQ8NE79 360 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 DLX4Q92988 240 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-213ENST00000489045 CENPOQ9BU64 300 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 SLA2Q9H6Q3 261 aa17.78■□□□□ 0.44
COL9A3-213ENST00000489045 RRP15Q9Y3B9 282 aaKnown RBP17.78■□□□□ 0.44
COL9A3-213ENST00000489045 LSM4Q9Y4Z0 139 aaKnown RBP17.78■□□□□ 0.44
COL9A3-213ENST00000489045 CRYGBP07316 175 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 CD40LGP29965 261 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 TAGLNQ01995 201 aaKnown RBP17.77■□□□□ 0.44
COL9A3-213ENST00000489045 RTL8BQ17RB0 113 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 SFXN4Q6P4A7 337 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 LGALS14Q8TCE9 139 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 OR51E2Q9H255 320 aa17.77■□□□□ 0.44
COL9A3-213ENST00000489045 ZNF256Q9Y2P7 627 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-213ENST00000489045 SORL1Q92673 2214 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms