RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 H7C2Y5 167 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 TRIM77I1YAP6 450 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 APOA2P02652 100 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 IGKV1-13P0DP09 117 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 IL7P13232 177 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 CD1BP29016 333 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 ADMP35318 185 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 ECI1P42126 302 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 THBS3P49746 956 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 UCP3P55916 312 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 HILS1P60008 231 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 TAGLNQ01995 201 aaKnown RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 CBX3Q13185 183 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 LSAMPQ13449 338 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 KLF9Q13886 244 aaPredicted RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 SLC9A3R2Q15599 337 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 MSMO1Q15800 293 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 LY6EQ16553 131 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 ZNF660Q6AZW8 331 aaPredicted RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 FAAP20Q6NZ36 180 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 THNSL2Q86YJ6 484 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 SLC38A6Q8IZM9 456 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 DRAXINQ8NBI3 349 aaPredicted RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 OR4D10Q8NGI6 311 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 ZFAND1Q8TCF1 268 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 SCGB3A2Q96PL1 93 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 FANCD2OSQ96PS1 177 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 DUX5Q96PT3 197 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 SDHCQ99643 169 aaPredicted RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 HSD17B10Q99714 261 aaKnown RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 NABP2Q9BQ15 211 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 ZNF251Q9BRH9 671 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 MRPL20Q9BYC9 149 aaKnown RBP8.28□□□□□ -1.08
SKA1-204ENST00000488454 HRASLSQ9HDD0 168 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 CCL28Q9NRJ3 127 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 PRELID3BQ9Y3B1 194 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 MTORP42345 2549 aa8.28□□□□□ -1.08
SKA1-204ENST00000488454 FN1P02751 2386 aaKnown RBP8.27□□□□□ -1.09
SKA1-204ENST00000488454 NAP1L6A6NFF2 107 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 DNAJC9-AS1A6NH13 148 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 OR5H14A6NHG9 310 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CLDN34H7C241 214 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 GPR31O00270 319 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 MOSP00540 346 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 IGKV1D-33P01593 117 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 IGKV1-33P01594 117 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CRYBA1P05813 215 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 SNRNP70P08621 437 aaKnown RBP8.27□□□□□ -1.09
SKA1-204ENST00000488454 ZNF735P0CB33 412 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CT45A6P0DMU7 189 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CT45A5P0DMU8 189 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CT45A7P0DMV0 189 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 RRASP10301 218 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 TMEM11P17152 192 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 CD24P25063 80 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 GNRHRP30968 328 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 HNF4GQ14541 408 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 ABCA11PQ4W5N1 156 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 C16orf87Q6PH81 154 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 ZNF66Q6ZN08 573 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 IDO2Q6ZQW0 420 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 OR51S1Q8NGJ8 323 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 OR2T10Q8NGZ9 312 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 TCTEX1D2Q8WW35 142 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 TSC22D3Q99576 134 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 C7orf50Q9BRJ6 194 aaKnown RBP8.27□□□□□ -1.09
SKA1-204ENST00000488454 RAB18Q9NP72 206 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 VPREB3Q9UKI3 123 aa8.27□□□□□ -1.09
SKA1-204ENST00000488454 FAM90A9PA6NNJ1 464 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 RNF212BA8MTL3 300 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 TNFSF12O43508 249 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 PROP1O75360 226 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 VENTXO95231 258 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 DUTP33316 252 aaKnown RBP8.26□□□□□ -1.09
SKA1-204ENST00000488454 UBA52P62987 128 aaKnown RBP8.26□□□□□ -1.09
SKA1-204ENST00000488454 CATR1Q13166 79 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 RTL8BQ17RB0 113 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 AADACL3Q5VUY0 350 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 GLDNQ6ZMI3 551 aaPredicted RBP8.26□□□□□ -1.09
SKA1-204ENST00000488454 ZNF818PQ6ZRF7 136 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 LHFPL1Q86WI0 220 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 ZDHHC22Q8N966 263 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 ZNF383Q8NA42 475 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 POC5Q8NA72 575 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 BVESQ8NE79 360 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 OR5AN1Q8NGI8 311 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 PIFOQ8TCI5 191 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 CFHR4Q92496 578 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 FLYWCH2Q96CP2 140 aaKnown RBP8.26□□□□□ -1.09
SKA1-204ENST00000488454 RSRP1Q9BUV0 290 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 ESM1Q9NQ30 184 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 SLC35D1Q9NTN3 355 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 SLC2A8Q9NY64 477 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 C1RLQ9NZP8 487 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 C14orf166Q9Y224 244 aaKnown RBP8.26□□□□□ -1.09
SKA1-204ENST00000488454 TCF19Q9Y242 345 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 WASHC3Q9Y3C0 194 aa8.26□□□□□ -1.09
SKA1-204ENST00000488454 A6NDX4 124 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 NCBP2LA6PVI3 153 aaKnown RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 H0YJW9 148 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms