RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 A8MWL6 223 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 UNC119Q13432 240 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF826PQ6ZT77 177 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 TMEM54Q969K7 222 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 P2RY6Q15077 328 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 MIC13Q5XKP0 118 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 HIST1H2BAQ96A08 127 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 HS3ST3B1Q9Y662 390 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 KCNMB2Q9Y691 235 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 LOC101059948A0A1B0GTJ6 334 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 EIF3GO75821 320 aaKnown RBP eCLIP14.12□□□□□ -0.15
COL7A1-210ENST00000487017 COX5BP10606 129 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 C10orf128Q5T292 105 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 LAMTOR1Q6IAA8 161 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 WNT5BQ9H1J7 359 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 LOC390937A0A1W2PQ73 354 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 MYOZ3Q8TDC0 251 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 HOXD4P09016 255 aaPredicted RBP14.12□□□□□ -0.15
COL7A1-210ENST00000487017 ARL6IP6Q8N6S5 226 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 DIRC2Q96SL1 478 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 LINC00869P0C866 280 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 C1orf185Q5T7R7 199 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 RHOVQ96L33 236 aa14.12□□□□□ -0.15
COL7A1-210ENST00000487017 SELENOTP62341 195 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 ATG101Q9BSB4 218 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 OPN3Q9H1Y3 402 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 COX6A1P12074 109 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 RPL27AP46776 148 aaKnown RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 CDX1P47902 265 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 TFPI2P48307 235 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 WDR25Q64LD2 544 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 ASPHD2Q6ICH7 369 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 OR8G5Q8NG78 346 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 SMIM8Q96KF7 97 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 FBLL1A6NHQ2 334 aaKnown RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 DLL1O00548 723 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 FHITP49789 147 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 SSX8Q7RTT4 187 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 CDC42EP3Q9UKI2 254 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 A0A0B4J293 547 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 CCL8P80075 99 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 SPANXN1Q5VSR9 72 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 PQLC2Q6ZP29 291 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 SPAG17Q6Q759 2223 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF236Q9UL36 1845 aa14.11□□□□□ -0.15
COL7A1-210ENST00000487017 RP1L1Q8IWN7 2480 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-210ENST00000487017 HLA-DQA1P01909 254 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 SLC25A33Q9BSK2 321 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 ZFP30Q9Y2G7 519 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 ZG16O60844 167 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 OR1N2Q8NGR9 330 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 DDA1Q9BW61 102 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 C17orf51A8MQB3 221 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 GLIPR1P48060 266 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 NPBWR2P48146 333 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 MC5RP33032 325 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 MRPL18Q9H0U6 180 aaKnown RBP14.1□□□□□ -0.15
COL7A1-210ENST00000487017 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.1□□□□□ -0.15
COL7A1-210ENST00000487017 CCDC144NLQ6NUI1 221 aa14.1□□□□□ -0.15
COL7A1-210ENST00000487017 H7C2G1 150 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 AGAP20933 346 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 KIR2DL2P43627 348 aaPredicted RBP14.09□□□□□ -0.15
COL7A1-210ENST00000487017 PCOLCEQ15113 449 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ITLN1Q8WWA0 313 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 MARCH11A6NNE9 402 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF735P0CB33 412 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 NMUP48645 174 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 RPL8P62917 257 aaKnown RBP14.09□□□□□ -0.15
COL7A1-210ENST00000487017 KCNMB1Q16558 191 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 OR4B1Q8NGF8 309 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 TMEM45BQ96B21 275 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 SCNM1Q9BWG6 230 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 TNS1Q9HBL0 1735 aaKnown RBP14.09□□□□□ -0.15
COL7A1-210ENST00000487017 SPAARA0A1B0GVQ0 90 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ODAMA1E959 279 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 PRR33A8MZF0 331 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 PCP4P48539 62 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 SPATA45Q537H7 98 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF441Q8N8Z8 693 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 TP53RKQ96S44 253 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 SAP25Q8TEE9 199 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 S1PR2O95136 353 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ARL14EPLP0DKL9 152 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF502Q8TBZ5 544 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 GPR61Q9BZJ8 451 aa14.09□□□□□ -0.15
COL7A1-210ENST00000487017 HOXB1P14653 301 aaPredicted RBP14.08□□□□□ -0.15
COL7A1-210ENST00000487017 DDTP30046 118 aa14.08□□□□□ -0.15
COL7A1-210ENST00000487017 TMEM74BQ9NUR3 256 aa14.08□□□□□ -0.15
COL7A1-210ENST00000487017 CALYQ9NYX4 217 aa14.08□□□□□ -0.15
COL7A1-210ENST00000487017 CARHSP1Q9Y2V2 147 aaKnown RBP14.08□□□□□ -0.15
COL7A1-210ENST00000487017 WNK3Q9BYP7 1800 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 NPIPB9F8W1W9 429 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 TWIST1Q15672 202 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 ZNF646O15015 1829 aaPredicted RBP14.08□□□□□ -0.16
COL7A1-210ENST00000487017 AMY1AP04745 511 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 LRRC75BQ2VPJ9 315 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 ZNF430Q9H8G1 570 aaPredicted RBP14.08□□□□□ -0.16
COL7A1-210ENST00000487017 SIPA1L1O43166 1804 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 IGKV3D-15A0A087WSY6 115 aa14.08□□□□□ -0.16
COL7A1-210ENST00000487017 KLF7O75840 302 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms