RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 LINC00587B1AMM8 73 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 ZG16O60844 167 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 CD200P41217 278 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 OR4S2Q8NH73 311 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 RHOVQ96L33 236 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 AP1S3Q96PC3 154 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 VPS25Q9BRG1 176 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 ATRXP46100 2492 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 DKK1O94907 266 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 ADH4P08319 380 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 HOXD4P09016 255 aaPredicted RBP11.19□□□□□ -0.62
HMGN1-216ENST00000486741 HSD17B10Q99714 261 aaKnown RBP11.19□□□□□ -0.62
HMGN1-216ENST00000486741 TMEM147Q9BVK8 224 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 RYDENQ9NUL5 291 aaKnown RBP11.19□□□□□ -0.62
HMGN1-216ENST00000486741 RFNGQ9Y644 331 aa11.19□□□□□ -0.62
HMGN1-216ENST00000486741 RAB7AP51149 207 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 RPL39P5Q59GN2 51 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 SH2D2AQ9NP31 389 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 LYRM2Q9NU23 88 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 TOX4O94842 621 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 PTBP3O95758 552 aaKnown RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 SMIM6P0DI80 62 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 TRAT1Q6PIZ9 186 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 ACP7Q6ZNF0 438 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 CYB561D1Q8N8Q1 229 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 ABHD14AQ9BUJ0 271 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 RBKSQ9H477 322 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 A0A087X0M5 115 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 A0A1B0GX30 115 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 A0A1W2PNU3 283 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 COTL1Q14019 142 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 KRTCAP3Q53RY4 240 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 FOXL2NBQ6ZUU3 175 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 TMPRSS5Q9H3S3 457 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 SLC25A10Q9UBX3 287 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 PITX3O75364 302 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 FABP4P15090 132 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 CDC34P49427 236 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 PRB3Q04118 309 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 PEAR1Q5VY43 1037 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-216ENST00000486741 LDLRAD3Q86YD5 345 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 GP6Q9HCN6 339 aa11.18□□□□□ -0.62
HMGN1-216ENST00000486741 ACACBO00763 2458 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 C17orf98A8MV24 154 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 SELLP14151 372 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 HLA-GP17693 338 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 TMEM42Q69YG0 159 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 ZNF645Q8N7E2 425 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 GAL3ST2Q9H3Q3 398 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 FAM157AC9JC47 383 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 PPP5D1E7EU14 171 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 TGOLN2O43493 480 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 PSPNO60542 156 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 SS18L1O75177 396 aaPredicted RBP11.17□□□□□ -0.62
HMGN1-216ENST00000486741 YIF1AO95070 293 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 HOXB1P14653 301 aaPredicted RBP11.17□□□□□ -0.62
HMGN1-216ENST00000486741 CHRNA7P36544 502 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 OR13D1Q8NGV5 346 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 ZDHHC16Q969W1 377 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 CALYQ9NYX4 217 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 NOTCH3Q9UM47 2321 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 IGHV3-21A0A0B4J1V1 117 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 TDGF1P13385 188 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 CSRP1P21291 193 aaKnown RBP11.17□□□□□ -0.62
HMGN1-216ENST00000486741 UCP1P25874 307 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 OPRK1P41145 380 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 PCP4P48539 62 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 KCNIP4Q6PIL6 250 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 C20orf204Q6ZNR8 217 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 DTX1Q86Y01 620 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 FAM216BQ8N7L0 139 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 PRO3102Q9H379 93 aa11.17□□□□□ -0.62
HMGN1-216ENST00000486741 MARCH11A6NNE9 402 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PGA5P0DJD9 388 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 MDKP21741 143 aaPredicted RBP11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PLA2G2CQ5R387 149 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 RPRMLQ8N4K4 120 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 LIME1Q9H400 295 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PPIAL4EA0A075B759 164 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PPIAL4DF5H284 164 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 H3BQ15 152 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PPIAL4FP0DN26 164 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 LINC00205P59089 165 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 LINC01560Q8TB33 94 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 MISP3Q96FF7 219 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 SNX22Q96L94 193 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 HARBI1Q96MB7 349 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 PPIAL4AQ9Y536 164 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 TMEM131Q92545 1883 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 G3V3Q6 166 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 SPINK4O60575 86 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 MPZP25189 248 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 SUB1P53999 127 aaKnown RBP eCLIP11.16□□□□□ -0.625e-59■■■■■ 41.6
HMGN1-216ENST00000486741 H1FOOQ8IZA3 346 aaPredicted RBP11.16□□□□□ -0.62
HMGN1-216ENST00000486741 ABHD12Q8N2K0 398 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 GTF3AQ92664 365 aaKnown RBP11.16□□□□□ -0.62
HMGN1-216ENST00000486741 KCNIP2Q9NS61 270 aa11.16□□□□□ -0.62
HMGN1-216ENST00000486741 DUXBA0A1W2PPF3 345 aa11.15□□□□□ -0.62
HMGN1-216ENST00000486741 A8MXK9 166 aa11.15□□□□□ -0.62
HMGN1-216ENST00000486741 PAGE4O60829 102 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms