RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 IGKV1-16P04430 117 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 RRASP10301 218 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 FCGR2CP31995 323 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 DUTP33316 252 aaKnown RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 RCVRNP35243 200 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 DYRK1AQ13627 763 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 C9orf152Q5JTZ5 239 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 ZNF660Q6AZW8 331 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 FOXRED2Q8IWF2 684 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 LAX1Q8IWV1 398 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 CHPT1Q8WUD6 406 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 TSNAXQ99598 290 aaKnown RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 SLC35D1Q9NTN3 355 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 KIAA1456Q9P272 454 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 RABL2AQ9UBK7 228 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 RABL2BQ9UNT1 228 aa12.55□□□□□ -0.4
UPF3A-208ENST00000484246 MRPS7Q9Y2R9 242 aaKnown RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 RBMX2Q9Y388 322 aaKnown RBP12.55□□□□□ -0.4
UPF3A-208ENST00000484246 MEIS3P1A6NDR6 274 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 H7C2Y5 167 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 CTDSP2O14595 271 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 RRHO14718 337 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 IGF1P05019 195 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 AADACP22760 399 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 CNTFRP26992 372 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 LINC00205P59089 165 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 MRPS10P82664 201 aaKnown RBP12.54□□□□□ -0.4
UPF3A-208ENST00000484246 C2orf68Q2NKX9 166 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 DHRS11Q6UWP2 260 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 SNX29P2Q8IUI4 249 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 ZBTB34Q8NCN2 500 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 RBMXL1Q96E39 390 aaKnown RBP12.54□□□□□ -0.4
UPF3A-208ENST00000484246 HSPB9Q9BQS6 159 aa12.54□□□□□ -0.4
UPF3A-208ENST00000484246 RSL24D1Q9UHA3 163 aaKnown RBP12.54□□□□□ -0.4
UPF3A-208ENST00000484246 ZNF107Q9UII5 783 aaPredicted RBP12.54□□□□□ -0.4
UPF3A-208ENST00000484246 CRIP2P52943 208 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-208ENST00000484246 CD83Q01151 205 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 RTL8BQ17RB0 113 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 TMEM177Q53S58 311 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 ACTBL2Q562R1 376 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 NDUFA11Q86Y39 141 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 LYSMD2Q8IV50 215 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 STPG2Q8N412 459 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 COMMD1Q8N668 190 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 OR5AU1Q8NGC0 362 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 OR4X2Q8NGF9 303 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 OR5H2Q8NGV7 314 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 FLYWCH2Q96CP2 140 aaKnown RBP12.53□□□□□ -0.4
UPF3A-208ENST00000484246 ABHD1Q96SE0 405 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 HSD17B10Q99714 261 aaKnown RBP12.53□□□□□ -0.4
UPF3A-208ENST00000484246 EHFQ9NZC4 300 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
UPF3A-208ENST00000484246 IGHV7-81A0A0B4J1V7 117 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 PSMB11A5LHX3 300 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 LINC00473A8K010 186 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 ADARB2-AS1A8MUL3 147 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 RGS5O15539 181 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 CD28P10747 220 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 TBPP20226 339 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 LGALS7P47929 136 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 CFHR3Q02985 330 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 SSBP1Q04837 148 aaKnown RBP12.52□□□□□ -0.41
UPF3A-208ENST00000484246 PSG5Q15238 335 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 TCTEX1D4Q5JR98 221 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 VAX1Q5SQQ9 334 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 ZNF66Q6ZN08 573 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 CENPVQ7Z7K6 275 aaPredicted RBP12.52□□□□□ -0.41
UPF3A-208ENST00000484246 BORCS5Q969J3 196 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 MOB3AQ96BX8 217 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 GON7Q9BXV9 100 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 MTFP1Q9UDX5 166 aa12.52□□□□□ -0.41
UPF3A-208ENST00000484246 LINC01548A6NM66 108 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 CTDSPLO15194 276 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 IGLV2-23P01705 113 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OPN1MWP04001 364 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 FCER2P06734 321 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OPN1MW2P0DN77 364 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OPN1MW3P0DN78 364 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 HRH1P35367 487 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 SLC35B1P78383 322 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 CBX3Q13185 183 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 PYHIN1Q6K0P9 492 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 LIN54Q6MZP7 749 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 KCTD9Q7L273 389 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 RNF152Q8N8N0 203 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OR52I2Q8NH67 350 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OSR1Q8TAX0 266 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-208ENST00000484246 NOL4LQ96MY1 436 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-208ENST00000484246 CITED2Q99967 270 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-208ENST00000484246 OR51J1Q9H342 316 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 FBXL15Q9H469 300 aa12.51□□□□□ -0.41
UPF3A-208ENST00000484246 GABARAPH6UMI1 98 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 CRYGBP07316 175 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 RFX2P48378 723 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 HERV-K104P61576 105 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 RPS16P62249 146 aaKnown RBP12.5□□□□□ -0.41
UPF3A-208ENST00000484246 RPL30P62888 115 aaKnown RBP12.5□□□□□ -0.41
UPF3A-208ENST00000484246 C11orf44Q8N8P7 122 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 BVESQ8NE79 360 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 MCFD2Q8NI22 146 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms