RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 PARP12Q9H0J9 701 aaKnown RBP6.69□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM222Q9H0R3 208 aa6.69□□□□□ -1.34
SYNE1-225ENST00000481502 NAA60Q9H7X0 242 aa6.69□□□□□ -1.34
SYNE1-225ENST00000481502 PLEKHA2Q9HB19 425 aa6.69□□□□□ -1.34
SYNE1-225ENST00000481502 RNF150Q9ULK6 438 aa6.69□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM56-RWDD3S4R434 201 aa6.69□□□□□ -1.34
SYNE1-225ENST00000481502 FLNAP21333 2647 aaKnown RBP6.69□□□□□ -1.34
SYNE1-225ENST00000481502 CSMD1Q96PZ7 3565 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 IGHV1-3A0A0C4DH29 117 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 C7orf66A4D0T2 115 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 FAM90A9PA6NNJ1 464 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 M0R1X1 148 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 SMAD7O15105 426 aaKnown RBP6.68□□□□□ -1.34
SYNE1-225ENST00000481502 CREBL2O60519 120 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-225ENST00000481502 SFT2D2O95562 160 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 HPRT1P00492 218 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 IFNA2P01563 188 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 CT45A6P0DMU7 189 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 CT45A5P0DMU8 189 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 CT45A7P0DMV0 189 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 ZNF16P17020 682 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-225ENST00000481502 AKR1C4P17516 323 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 HLA-GP17693 338 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 COX7A1P24310 79 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 SAA4P35542 130 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 KRTAP1-1Q07627 177 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 BAMBIQ13145 260 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 POU2AF1Q16633 256 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 RTL8BQ17RB0 113 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM177Q53S58 311 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 KLF17Q5JT82 389 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-225ENST00000481502 Q6ZNX1 250 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 TBC1D26Q86UD7 250 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 FAM219AQ8IW50 185 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 MAPK1IP1LQ8NDC0 245 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 OR4C13Q8NGP0 309 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 OR4S2Q8NH73 311 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 COQ8AQ8NI60 647 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 ZNF431Q8TF32 576 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-225ENST00000481502 ASB13Q8WXK3 278 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 LEAP2Q969E1 77 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM230Q96A57 120 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 NABP2Q9BQ15 211 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 COMMD9Q9P000 198 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 CDC42EP3Q9UKI2 254 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 WASHC3Q9Y3C0 194 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 FAM96BQ9Y3D0 163 aa6.68□□□□□ -1.34
SYNE1-225ENST00000481502 HIVEP2P31629 2446 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 TRAV6A0A075B6T7 132 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 TRAV40A0A0B4J280 105 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 A0A1W2PPI3 338 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 C9orf170A2RU37 121 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 H0YJW9 148 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 SPDEFO95238 335 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 HRASP01112 189 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 AVPP01185 164 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 HLA-AP01891 365 aaKnown RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 SERPINE2P07093 398 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 FAM106CPP0CH98 169 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 SLC25A6P12236 298 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 RAB25P57735 213 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 SUPT4H1P63272 117 aaKnown RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 DHRS2Q13268 280 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 C4orf46Q504U0 113 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 RPL39P5Q59GN2 51 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 FAM53AQ6NSI3 398 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 LIAT1Q6ZQX7 453 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 C1orf229Q6ZS94 237 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 C16orf82Q7Z2V1 217 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 TMED4Q7Z7H5 227 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 LGI3Q8N145 548 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM86BQ8N661 226 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 VSTM2AQ8TAG5 236 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 GLYATL2Q8WU03 294 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 LSM10Q969L4 123 aaKnown RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 FLYWCH2Q96CP2 140 aaKnown RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 AJUBAQ96IF1 538 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 PHB2Q99623 299 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 MS4A7Q9GZW8 240 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-225ENST00000481502 PITPNC1Q9UKF7 332 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 ACANP16112 2415 aa6.67□□□□□ -1.34
SYNE1-225ENST00000481502 MAP1AP78559 2803 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-225ENST00000481502 A0A1W2PPE3 182 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 DBX1A6NMT0 343 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 LINC00473A8K010 186 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 IGHV3-7P01780 117 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 TRAPPC2P0DI81 140 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 TRAPPC2BP0DI82 140 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 NQO2P16083 231 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 ANXA7P20073 488 aaKnown RBP6.66□□□□□ -1.34
SYNE1-225ENST00000481502 VDAC1P21796 283 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 VAMP1P23763 118 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 KLRD1Q13241 179 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 PPP1R1AQ13522 171 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 TMEM187Q14656 261 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 TATDN3Q17R31 274 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 PHLDA2Q53GA4 152 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 FAM120AOSQ5T036 256 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 UTF1Q5T230 341 aa6.66□□□□□ -1.34
SYNE1-225ENST00000481502 SPAG16Q8N0X2 631 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms