RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF585BQ52M93 769 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 AMIGO2Q86SJ2 522 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 ODF3L1Q8IXM7 274 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 SUMF2Q8NBJ7 301 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 OR2AK2Q8NG84 335 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 OR5D18Q8NGL1 313 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 NEK7Q8TDX7 302 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 RFT1Q96AA3 541 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 CHRDL1Q9BU40 450 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 ZNF556Q9HAH1 456 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 OR2S2Q9NQN1 319 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 TRAPPC2LQ9UL33 140 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 IGKV1-9A0A0C4DH69 117 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 LOC107986453A0A1B0GWG9 222 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 CREBL2O60519 120 aaPredicted RBP5.74□□□□□ -1.49
USP54-211ENST00000474929 YPEL1O60688 119 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 CIB2O75838 187 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 OR7C1O76099 320 aaPredicted RBP5.74□□□□□ -1.49
USP54-211ENST00000474929 HBZP02008 142 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 APOA2P02652 100 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 SMR3BP02814 79 aaPredicted RBP5.74□□□□□ -1.49
USP54-211ENST00000474929 SPP1P10451 314 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 CAPGP40121 348 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 HTD2P86397 168 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 MPV17LQ2QL34 196 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 NHLRC3Q5JS37 347 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 TMEM236Q5W0B7 351 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 ZNF322Q6U7Q0 402 aaPredicted RBP5.74□□□□□ -1.49
USP54-211ENST00000474929 ZNF497Q6ZNH5 498 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 PDPNQ86YL7 162 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 ZDHHC13Q8IUH4 622 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 C10orf67Q8IYJ2 551 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 PRR18Q8N4B5 295 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 PXT1Q8NFP0 134 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 OR5AN1Q8NGI8 311 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 FAM46BQ96A09 425 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 YPEL2Q96QA6 119 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 NR1H4Q96RI1 486 aaPredicted RBP5.74□□□□□ -1.49
USP54-211ENST00000474929 TEX12Q9BXU0 123 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 SPACA1Q9HBV2 294 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 ADGRL4Q9HBW9 690 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 AP4S1Q9Y587 144 aa5.74□□□□□ -1.49
USP54-211ENST00000474929 ELOA3CA0A087WX78 387 aaPredicted RBP5.73□□□□□ -1.49
USP54-211ENST00000474929 TMEM189A5PLL7 270 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 FAM90A7PA6NKC0 464 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 CA11O75493 328 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 S1PR2O95136 353 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 KRT8P05787 483 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 OSMP13725 252 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 ANXA8P13928 327 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 HOXB6P17509 224 aaKnown RBP5.73□□□□□ -1.49
USP54-211ENST00000474929 DAPP51397 102 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 CBX3Q13185 183 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 RIPK1Q13546 671 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 PTGES3Q15185 160 aaKnown RBP5.73□□□□□ -1.49
USP54-211ENST00000474929 ZNF529Q6P280 563 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 CD300LDQ6UXZ3 194 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 APRG1Q8IVJ8 170 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 OR52L2PQ8NGH6 319 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 ZNRF2Q8NHG8 242 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 EEF1AKMT3Q96AZ1 226 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 JAM3Q9BX67 310 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 DAZ1Q9NQZ3 744 aaKnown RBP5.73□□□□□ -1.49
USP54-211ENST00000474929 TMEM14BQ9NUH8 114 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 KCNIP1Q9NZI2 227 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 STEAP1Q9UHE8 339 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 TBC1D24Q9ULP9 559 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 CELA1Q9UNI1 258 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 SELENOKQ9Y6D0 94 aa5.73□□□□□ -1.49
USP54-211ENST00000474929 A0A1W2PPQ1 181 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 ZNF670-ZNF695F2Z2N8 137 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 G3V2T6 193 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 H3BNX3 289 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 DHFRP00374 187 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 HLA-AP01891 365 aaKnown RBP5.72□□□□□ -1.49
USP54-211ENST00000474929 MT-ND4P03905 459 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 HMGN1P05114 100 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 SPART-AS1P0CW21 52 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 PSMB6P28072 239 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 CRISP1P54107 249 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 ERVFC1-1P60608 527 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 CXCR4P61073 352 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 GK3PQ14409 553 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 ATP6AP1Q15904 470 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 ODF4Q2M2E3 257 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 TMEM244Q5VVB8 128 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 CPOQ8IVL8 374 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 STHQ8IWL8 128 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 CCDC107Q8WV48 283 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 PYDC1Q8WXC3 89 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 NRBF2Q96F24 287 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 SPIN2AQ99865 258 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 SPIN2BQ9BPZ2 258 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 SLC2A9Q9NRM0 540 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 TVP23BQ9NYZ1 205 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 LRRC42Q9Y546 428 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 GMPPBQ9Y5P6 360 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 DMRT1Q9Y5R6 373 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 LRP2P98164 4655 aa5.72□□□□□ -1.49
USP54-211ENST00000474929 TRBV7-1A0A0A6YYK4 115 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms