RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TNXAQ16473 311 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 WDR25Q64LD2 544 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-209ENST00000472056 SPEM1Q8N4L4 309 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 OBSL1O75147 1896 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 CLDN14O95500 239 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 FGF5P12034 268 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 TSPOP30536 169 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 LOXL2Q9Y4K0 774 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 LOC389332A0A1B0GUA5 103 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SPRY3O43610 288 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 FGF12P61328 243 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SMAD4Q13485 552 aaKnown RBP11.59□□□□□ -0.55
COL6A3-209ENST00000472056 TSPO2Q5TGU0 170 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 COX14Q96I36 57 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 TLNRD1Q9H1K6 362 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 B4GALNT1Q00973 533 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 INSL4Q14641 139 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 OTPQ5XKR4 325 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SHANK3Q9BYB0 1731 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 RLN3Q8WXF3 142 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 ABHD14AQ9BUJ0 271 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 WDR54Q9H977 334 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 KCNMB2Q9Y691 235 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 IGHV3-15A0A0B4J1V0 119 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SOCS1O15524 211 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 GCSAMQ8N6F7 178 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 TRMT61AQ96FX7 289 aaKnown RBP11.59□□□□□ -0.55
COL6A3-209ENST00000472056 MUC4Q99102 2169 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SEC11AP67812 179 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF658BQ4V348 819 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-209ENST00000472056 SPATA46Q5T0L3 261 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 KCNS1Q96KK3 526 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF714Q96N38 554 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 NCOR1P1Q9H4R4 102 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 DNAJC4Q9NNZ3 241 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 NDUFA2O43678 99 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 PRSS2P07478 247 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 PGPEP1Q9NXJ5 209 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 PRNTQ86SH4 94 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 OR4X2Q8NGF9 303 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 MS4A7Q9GZW8 240 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-209ENST00000472056 COA4Q9NYJ1 87 aa11.59□□□□□ -0.55
COL6A3-209ENST00000472056 HOXD4P09016 255 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-209ENST00000472056 IGHV3-20A0A0C4DH32 117 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TRBV5-5A0A0J9YX44 114 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 DLL1O00548 723 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 VSIG8P0DPA2 414 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM91Q6ZNR0 172 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 SRSF5Q13243 272 aaKnown RBP11.58□□□□□ -0.56
COL6A3-209ENST00000472056 NDUFAF3Q9BU61 184 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 YBX2Q9Y2T7 364 aaKnown RBP11.58□□□□□ -0.56
COL6A3-209ENST00000472056 A0A1B0GTL3 188 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TMPRSS2O15393 492 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 HIST1H1AQ02539 215 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-209ENST00000472056 C1orf100Q5SVJ3 147 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 LYPD8Q6UX82 237 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF430Q9H8G1 570 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM56-RWDD3S4R434 201 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 A0A1B0GTH9 108 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 PRRT4C9JH25 899 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 J3QW42 95 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 FCGR3AP08637 254 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 FAM27BQ5VT28 67 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 C5orf30Q96GV9 206 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM177Q53S58 311 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 OR2Y1Q8NGV0 311 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM242Q9NWH2 141 aa11.58□□□□□ -0.56
COL6A3-209ENST00000472056 C21orf140B9A014 251 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 MOSPD3O75425 235 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 C10orf111Q8N326 155 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 OR51G1Q8NGK1 321 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 DEFB127Q9H1M4 99 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 F2RL2O00254 374 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 EDIL3O43854 480 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 RRN3P1Q2M238 152 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF683Q8IZ20 524 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 ADAMTSL1Q8N6G6 1762 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 GNG10P50151 68 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 CEACAM21Q3KPI0 293 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 FAM71F2Q6NXP2 309 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 MOGAT3Q86VF5 341 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 OR4C13Q8NGP0 309 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 ERVH48-1M5A8F1 160 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 LINC00614P0C842 121 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 RCC1P18754 421 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-209ENST00000472056 RPL8P62917 257 aaKnown RBP11.57□□□□□ -0.56
COL6A3-209ENST00000472056 ZIC1Q15915 447 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM101Q96IK0 257 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
COL6A3-209ENST00000472056 GPR132Q9UNW8 380 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 SIP14410 1827 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 A0A1W2PPC1 479 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 PTGDSP41222 190 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF600Q6ZNG1 722 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 MMD2Q8IY49 270 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 FAM222BQ8WU58 562 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 TRAV8-7A0A075B6U6 113 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 PSG2P11465 335 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 RTN4RL1Q86UN2 441 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-209ENST00000472056 GPBAR1Q8TDU6 330 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms