RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 OR10R2Q8NGX6 335 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 CASTOR1Q8WTX7 329 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 C5orf30Q96GV9 206 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 TSNAXQ99598 290 aaKnown RBP12.61□□□□□ -0.39
COL9A3-208ENST00000469802 FAM103A1Q9BTL3 118 aaKnown RBP12.61□□□□□ -0.39
COL9A3-208ENST00000469802 RAB26Q9ULW5 256 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF256Q9Y2P7 627 aaPredicted RBP12.61□□□□□ -0.39
COL9A3-208ENST00000469802 A3GALT2U3KPV4 340 aa12.61□□□□□ -0.39
COL9A3-208ENST00000469802 TRBV6-7A0A0A0MS04 114 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 APOA2P02652 100 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 HIST1H1DP16402 221 aaKnown RBP12.6□□□□□ -0.39
COL9A3-208ENST00000469802 TMEM267Q0VDI3 215 aaPredicted RBP12.6□□□□□ -0.39
COL9A3-208ENST00000469802 ACTBL2Q562R1 376 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 IGSF11Q5DX21 431 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 DCUN1D4Q92564 292 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 OR2D2Q9H210 308 aa12.6□□□□□ -0.39
COL9A3-208ENST00000469802 STAB2Q8WWQ8 2551 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 M0R1X1 148 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 OVOL1O14753 267 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 ARPC1BO15143 372 aaKnown RBP12.59□□□□□ -0.39
COL9A3-208ENST00000469802 IGLV2-23P01705 113 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 GNB3P16520 340 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 MYL9P24844 172 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 MRPS15P82914 257 aaKnown RBP12.59□□□□□ -0.39
COL9A3-208ENST00000469802 UNQ5815/PRO19632Q6UWF5 114 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 Q6ZS49 121 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 ZNF429Q86V71 674 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 LFNGQ8NES3 379 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 ABHD5Q8WTS1 349 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 ARPC1AQ92747 370 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 DLX4Q92988 240 aaPredicted RBP12.59□□□□□ -0.39
COL9A3-208ENST00000469802 SDHAF2Q9NX18 166 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 TNCP24821 2201 aa12.59□□□□□ -0.39
COL9A3-208ENST00000469802 IGHV4OR15-8A0A075B7B6 117 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 A0A087WW49 117 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 A0A0B4J203 849 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 LINC01619G3V211 115 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 BET1O15155 118 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 SLC25A17O43808 307 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 MRPS14O60783 128 aaKnown RBP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 CRYGBP07316 175 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 NHLRC4P0CG21 123 aaPredicted RBP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 GSTT2P0CG29 244 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 GSTT2BP0CG30 244 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 RAB3BP20337 219 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 GADD45AP24522 165 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 SLURP1P55000 103 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 RPS16P62249 146 aaKnown RBP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 SRSF7Q16629 238 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 UBE2UQ5VVX9 321 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 OR10J5Q8NHC4 309 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 FLYWCH2Q96CP2 140 aaKnown RBP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 WWC2-AS2Q96NR7 200 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 CLCC1Q96S66 551 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 SLA2Q9H6Q3 261 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 SLC35D1Q9NTN3 355 aa12.58□□□□□ -0.4
COL9A3-208ENST00000469802 ZNF230Q9UIE0 474 aaPredicted RBP12.58□□□□□ -0.4
COL9A3-208ENST00000469802 OR8U9P0C7N5 309 aa12.57□□□□□ -0.4
COL9A3-208ENST00000469802 C22orf42Q6IC83 251 aa12.57□□□□□ -0.4
COL9A3-208ENST00000469802 MAFIPQ8WZ33 124 aa12.57□□□□□ -0.4
COL9A3-208ENST00000469802 NBEAL2Q6ZNJ1 2754 aa12.57□□□□□ -0.4
COL9A3-208ENST00000469802 A0A075B6Q4 140 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 IGKV1D-8A0A087WSZ0 117 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 METTL21EPA6NDL7 271 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 FGF9P31371 208 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-208ENST00000469802 LGALS7P47929 136 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 TPPP2P59282 170 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 FXYD3Q14802 87 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 TMEM177Q53S58 311 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 ACSM6Q6P461 480 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 H1FOOQ8IZA3 346 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-208ENST00000469802 GRPEL2Q8TAA5 225 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 DDB2Q92466 427 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 RHOVQ96L33 236 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 HARBI1Q96MB7 349 aa12.56□□□□□ -0.4
COL9A3-208ENST00000469802 H3BUA1 57 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 BRI3O95415 125 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 ATP6V1G2O95670 118 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 IGHV3-11P01762 117 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 DTYMKP23919 212 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 TAGLNQ01995 201 aaKnown RBP12.55□□□□□ -0.4
COL9A3-208ENST00000469802 PJVKQ0ZLH3 352 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 MRGPRG-AS1Q2M3A8 158 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 SPARTQ8N0X7 666 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 POC5Q8NA72 575 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 MS4A10Q96PG2 267 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 ELF5Q9UKW6 265 aaPredicted RBP12.55□□□□□ -0.4
COL9A3-208ENST00000469802 U3KQK5 164 aa12.55□□□□□ -0.4
COL9A3-208ENST00000469802 SMIM30A4D0T7 59 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 SRRM4A7MD48 611 aaKnown RBP12.54□□□□□ -0.4
COL9A3-208ENST00000469802 SAP30O75446 220 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 TRGV3P03979 118 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 HSPB1P04792 205 aaKnown RBP12.54□□□□□ -0.4
COL9A3-208ENST00000469802 DUTP33316 252 aaKnown RBP12.54□□□□□ -0.4
COL9A3-208ENST00000469802 ARFRP1Q13795 201 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 ARL6IP1Q15041 203 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 CENPOQ9BU64 300 aa12.54□□□□□ -0.4
COL9A3-208ENST00000469802 TXNL4BQ9NX01 149 aaKnown RBP12.54□□□□□ -0.4
COL9A3-208ENST00000469802 HUWE1Q7Z6Z7 4374 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms