RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 SERPINE2P07093 398 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 MMP9P14780 707 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 KIR2DS2P43631 304 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 NKX2-5P52952 324 aaPredicted RBP9.65□□□□□ -0.86
USP54-209ENST00000464635 HOXA4Q00056 320 aaPredicted RBP9.65□□□□□ -0.86
USP54-209ENST00000464635 NMSQ5H8A3 153 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 PRSS54Q6PEW0 395 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 ZNF841Q6ZN19 808 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 C1orf229Q6ZS94 237 aaPredicted RBP9.65□□□□□ -0.86
USP54-209ENST00000464635 ACOT7LQ6ZUV0 252 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 ZNF546Q86UE3 836 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 PRR18Q8N4B5 295 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 FAM216BQ8N7L0 139 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 ZNF714Q96N38 554 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 DCAF16Q9NXF7 216 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 GNG12Q9UBI6 72 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 TNFSF18Q9UNG2 199 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 HSPB11Q9Y547 144 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 C17orf98A8MV24 154 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 DVL1O14640 695 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 RAB29O14966 203 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 ADAP1O75689 374 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 AVPP01185 164 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 HOXB5P09067 269 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 NDUFB7P17568 137 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 S100A11P31949 105 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 IAH1Q2TAA2 248 aaPredicted RBP9.64□□□□□ -0.87
USP54-209ENST00000464635 Q5BKY6 102 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 C1orf122Q6ZSJ8 110 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 SLC25A48Q6ZT89 311 aaKnown RBP9.64□□□□□ -0.87
USP54-209ENST00000464635 ZNF767PQ75MW2 155 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 TCF23Q7RTU1 214 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 C5orf24Q7Z6I8 188 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 TPRX1Q8N7U7 411 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 ZNF439Q8NDP4 499 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 GRPEL2Q8TAA5 225 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 NEIL1Q96FI4 390 aaPredicted RBP9.64□□□□□ -0.87
USP54-209ENST00000464635 WDR89Q96FK6 387 aaPredicted RBP9.64□□□□□ -0.87
USP54-209ENST00000464635 OR10C1Q96KK4 312 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 DCTN5Q9BTE1 182 aa9.64□□□□□ -0.87
USP54-209ENST00000464635 C13orf42A0A1B0GVH6 325 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 hCG_1809904A0A1W2PP81 198 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 A0A1W2PPE2 198 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 A0A1W2PR64 198 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 A0A1W2PRV1 198 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 FAM25EA8MYX2 175 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 FAM90A26D6RGX4 464 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 F5H0A9 414 aaPredicted RBP9.63□□□□□ -0.87
USP54-209ENST00000464635 SMLR1H3BR10 107 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 L7N2F9 121 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 TCF21O43680 179 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 LY86O95711 162 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 IGHV2-5P01817 119 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 PPP1CCP36873 323 aaKnown RBP9.63□□□□□ -0.87
USP54-209ENST00000464635 ZNF137PP52743 207 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 DLX6P56179 175 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 ID3Q02535 119 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 SP6Q3SY56 376 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 TMEM268Q5VZI3 342 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 TMEM200BQ69YZ2 307 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 LYZL2Q7Z4W2 148 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 KCNRGQ8N5I3 272 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.63□□□□□ -0.87
USP54-209ENST00000464635 SLC35G3Q8N808 338 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 LY6G5BQ8NDX9 201 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 OR8B3Q8NGG8 313 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 OR4D5Q8NGN0 318 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 RFESDQ8TAC1 157 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 LHFPL5Q8TAF8 219 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 SEC22AQ96IW7 307 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 OR8B2Q96RD0 313 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 ABHD14AQ9BUJ0 271 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 RNF126Q9BV68 326 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 MFFQ9GZY8 342 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 OR2D2Q9H210 308 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 PLEKHA2Q9HB19 425 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 PATZ1Q9HBE1 687 aaKnown RBP9.63□□□□□ -0.87
USP54-209ENST00000464635 SDHAF2Q9NX18 166 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 CTSZQ9UBR2 303 aa9.63□□□□□ -0.87
USP54-209ENST00000464635 PAIP2BQ9ULR5 123 aaKnown RBP9.63□□□□□ -0.87
USP54-209ENST00000464635 LOC105371242A0A075B767 164 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 TRAV20A0A0B4J274 112 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 CCSO14618 274 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 TAAR5O14804 337 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 ST8SIA3O43173 380 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 PITX3O75364 302 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 DEDDO75618 318 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 VENTXO95231 258 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 TFF1P04155 84 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 SELLP14151 372 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 DUTP33316 252 aaKnown RBP9.62□□□□□ -0.87
USP54-209ENST00000464635 GPR12P47775 334 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 IFITM2Q01629 132 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 SMCO1Q147U7 214 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 NDUFA5Q16718 116 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 ZNF585BQ52M93 769 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 GPR157Q5UAW9 335 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 LYPD2Q6UXB3 125 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 FAM71E2Q8N5Q1 922 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 INO80EQ8NBZ0 244 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms