RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 MPZP25189 248 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 OR4A47Q6IF82 309 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 TMEM54Q969K7 222 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 OR2J1Q9GZK6 312 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 CBLN4Q9NTU7 201 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 IL36RNQ9UBH0 155 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 IGKV3-11P04433 115 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 SCGB1D4Q6XE38 83 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 DLL3Q9NYJ7 618 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 ANKRD36A6QL64 1941 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 IGHV1-45A0A0A0MS14 117 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 PATE3B3GLJ2 98 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 AGFG2O95081 481 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 SNRPCP09234 159 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 IGFBP3P17936 291 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 OR8I2Q8N0Y5 310 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 Q8WTZ3 238 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 FGF11Q92914 225 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 WFIKKN1Q96NZ8 548 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 C19orf24Q9BVV8 132 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 GNG7O60262 68 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 RHBDL1O75783 438 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 ASPHD2Q6ICH7 369 aa16.34■□□□□ 0.21
CCDC88B-204ENST00000463837 FBLN5Q9UBX5 448 aa16.33■□□□□ 0.21
CCDC88B-204ENST00000463837 FAM157AC9JC47 383 aa16.33■□□□□ 0.21
CCDC88B-204ENST00000463837 ZNF818PQ6ZRF7 136 aa16.33■□□□□ 0.21
CCDC88B-204ENST00000463837 SPSB4Q96A44 273 aa16.33■□□□□ 0.21
CCDC88B-204ENST00000463837 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 F8VVB4 439 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 F8VWA3 439 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 OR8B3Q8NGG8 313 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 RBM14Q96PK6 669 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 OR8B2Q96RD0 313 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 A0A1W2PPE3 182 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 C5orf52A6NGY3 159 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 RPL30P62888 115 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 STPG1Q5TH74 334 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 FAM216AQ8WUB2 273 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 SLC25A33Q9BSK2 321 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 HIGD1AQ9Y241 93 aa16.33■□□□□ 0.2
CCDC88B-204ENST00000463837 FBLL1A6NHQ2 334 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 HYPMO75409 117 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 HOXA5P20719 270 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 CD40P25942 277 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 CLDN18P56856 261 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNHIT1O43257 154 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 PSMB2P49721 201 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 TPRX1Q8N7U7 411 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 SNRNP40Q96DI7 357 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 RTBDNQ9BSG5 229 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 FGF16O43320 207 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 SRP19P09132 144 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 C1RLQ9NZP8 487 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 TMSB15BA0A087X1C1 80 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF729A6NN14 1252 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 ADRA2AP08913 450 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 OR4A8P0C604 315 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 APELAP0DMC3 54 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 TTTY12Q9BZ98 90 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 PLSCR2Q9NRY7 297 aa16.32■□□□□ 0.2
CCDC88B-204ENST00000463837 TP53RKQ96S44 253 aa16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 K7N7A8 449 aa16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 KCNMB1Q16558 191 aa16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 HEXA-AS1Q9H8Q6 139 aa16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 C16orf97H3BN30 126 aa16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 ATP5IP56385 69 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF658BQ4V348 819 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-204ENST00000463837 IGHV3OR15-7A0A075B7D8 119 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 SOD3P08294 240 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 UCP2P55851 309 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 TAS2R60P59551 318 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 MYOZ3Q8TDC0 251 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 SFRP2Q96HF1 295 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 DLL1O00548 723 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 CYP2G1PQ6ZSU1 146 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 BIVMQ86UB2 503 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 CEACAM18A8MTB9 384 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 GAS1P54826 345 aa16.3■□□□□ 0.2
CCDC88B-204ENST00000463837 A0A1W2PRD5 423 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 A0A1W2PRF3 423 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 A0A1W2PRM7 423 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 J3QW42 95 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 NMUP48645 174 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 LY6G6FQ5SQ64 297 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 MIC13Q5XKP0 118 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF600Q6ZNG1 722 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 XIRP1Q702N8 1843 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 IGHV3-21A0A0B4J1V1 117 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF716A6NP11 495 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 CA2P00918 260 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 FGF5P12034 268 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 UQCRFS1P47985 274 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 SRSF9Q13242 221 aaKnown RBP eCLIP16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 FAM222BQ8WU58 562 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 LOC389332A0A1B0GUA5 103 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 RNF224P0DH78 156 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 FOLR2P14207 255 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 TMEM30BQ3MIR4 351 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF441Q8N8Z8 693 aa16.29■□□□□ 0.2
CCDC88B-204ENST00000463837 ARL14EPLP0DKL9 152 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms