RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 CLCC1Q96S66 551 aa14.7□□□□□ -0.06
VARS-220ENST00000461874 TSNAXQ99598 290 aaKnown RBP14.7□□□□□ -0.06
VARS-220ENST00000461874 A3GALT2U3KPV4 340 aa14.7□□□□□ -0.06
VARS-220ENST00000461874 COL7A1Q02388 2944 aa14.7□□□□□ -0.06
VARS-220ENST00000461874 A0A075B6Q4 140 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 TRBV6-7A0A0A0MS04 114 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 METTL21EPA6NDL7 271 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 BET1O15155 118 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 SPDEFO95238 335 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 ATP6V1G2O95670 118 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 APOA2P02652 100 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 OR8U9P0C7N5 309 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 CD69Q07108 199 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 ZNF260Q3ZCT1 412 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 AKIRIN2Q53H80 203 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 SPARTQ8N0X7 666 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 OR10J5Q8NHC4 309 aa14.69□□□□□ -0.06
VARS-220ENST00000461874 FLYWCH2Q96CP2 140 aaKnown RBP14.69□□□□□ -0.06
VARS-220ENST00000461874 FAM103A1Q9BTL3 118 aaKnown RBP14.69□□□□□ -0.06
VARS-220ENST00000461874 ZNF230Q9UIE0 474 aaPredicted RBP14.69□□□□□ -0.06
VARS-220ENST00000461874 CA2P00918 260 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 ECI1P42126 302 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 ACTBL2Q562R1 376 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 C11orf87Q6NUJ2 197 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 UNQ5815/PRO19632Q6UWF5 114 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 LFNGQ8NES3 379 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 CASTOR1Q8WTX7 329 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 MAFIPQ8WZ33 124 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 ALX4Q9H161 411 aaPredicted RBP14.68□□□□□ -0.06
VARS-220ENST00000461874 SDHAF2Q9NX18 166 aa14.68□□□□□ -0.06
VARS-220ENST00000461874 FGF9P31371 208 aaPredicted RBP14.67□□□□□ -0.06
VARS-220ENST00000461874 SRSF7Q16629 238 aaKnown RBP eCLIP14.67□□□□□ -0.06
VARS-220ENST00000461874 PYHIN1Q6K0P9 492 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 Q6ZS49 121 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 PRR25Q96S07 402 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 OR2D2Q9H210 308 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 TPSG1Q9NRR2 321 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 SLC35D1Q9NTN3 355 aa14.67□□□□□ -0.06
VARS-220ENST00000461874 LSM4Q9Y4Z0 139 aaKnown RBP14.67□□□□□ -0.06
VARS-220ENST00000461874 SMIM30A4D0T7 59 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 SLC25A17O43808 307 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 IGLV2-23P01705 113 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 LGALS1P09382 135 aaKnown RBP14.66□□□□□ -0.06
VARS-220ENST00000461874 PSMB9P28065 219 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 TALDO1P37837 337 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 LGALS7P47929 136 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 INSL3P51460 131 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 ARFRP1Q13795 201 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 DCUN1D4Q92564 292 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 FCGR1BQ92637 280 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 ARPC1AQ92747 370 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 C5orf30Q96GV9 206 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 YTHDF1Q9BYJ9 559 aaKnown RBP14.66□□□□□ -0.06
VARS-220ENST00000461874 ATG5Q9H1Y0 275 aa14.66□□□□□ -0.06
VARS-220ENST00000461874 TXNL4BQ9NX01 149 aaKnown RBP14.66□□□□□ -0.06
VARS-220ENST00000461874 NOTOA8MTQ0 251 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 LINC01619G3V211 115 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 ARPC1BO15143 372 aaKnown RBP14.65□□□□□ -0.06
VARS-220ENST00000461874 FXYD3Q14802 87 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 ARL6IP1Q15041 203 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 GINS4Q9BRT9 223 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 CENPOQ9BU64 300 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 Q9H521 79 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.65□□□□□ -0.06
VARS-220ENST00000461874 ELF5Q9UKW6 265 aaPredicted RBP14.65□□□□□ -0.06
VARS-220ENST00000461874 STUB1Q9UNE7 303 aa14.65□□□□□ -0.06
VARS-220ENST00000461874 IGKV1D-8A0A087WSZ0 117 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 OVOL1O14753 267 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 CRYGBP07316 175 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 CD40LGP29965 261 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 SSBP2P81877 361 aaPredicted RBP14.64□□□□□ -0.07
VARS-220ENST00000461874 TAGLNQ01995 201 aaKnown RBP14.64□□□□□ -0.07
VARS-220ENST00000461874 CDNFQ49AH0 187 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 TPRA1Q86W33 373 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 H1FOOQ8IZA3 346 aaPredicted RBP14.64□□□□□ -0.07
VARS-220ENST00000461874 GRPEL2Q8TAA5 225 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 DLX4Q92988 240 aaPredicted RBP14.64□□□□□ -0.07
VARS-220ENST00000461874 MS4A10Q96PG2 267 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 SLA2Q9H6Q3 261 aa14.64□□□□□ -0.07
VARS-220ENST00000461874 ZNF256Q9Y2P7 627 aaPredicted RBP14.64□□□□□ -0.07
VARS-220ENST00000461874 IGHV4OR15-8A0A075B7B6 117 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 A0A087WW49 117 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 IGHV3-11P01762 117 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 DTYMKP23919 212 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 SLURP1P55000 103 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 TPPP2P59282 170 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 PJVKQ0ZLH3 352 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 TMEM177Q53S58 311 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 ZNF429Q86V71 674 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 BVESQ8NE79 360 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 RHOVQ96L33 236 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 HARBI1Q96MB7 349 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 RBM7Q9Y580 266 aaKnown RBP14.63□□□□□ -0.07
VARS-220ENST00000461874 SORL1Q92673 2214 aa14.63□□□□□ -0.07
VARS-220ENST00000461874 CNIH1O95406 144 aa14.62□□□□□ -0.07
VARS-220ENST00000461874 HSPB1P04792 205 aaKnown RBP14.62□□□□□ -0.07
VARS-220ENST00000461874 CBX3Q13185 183 aa14.62□□□□□ -0.07
VARS-220ENST00000461874 HACD4Q5VWC8 232 aa14.62□□□□□ -0.07
VARS-220ENST00000461874 SSR3Q9UNL2 185 aa14.62□□□□□ -0.07
VARS-220ENST00000461874 SRRM4A7MD48 611 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms