RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 PLCXD1Q9NUJ7 323 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 KCNIP1Q9NZI2 227 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 PSORS1C1Q9UIG5 152 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 JPT1Q9UK76 154 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 LRRC42Q9Y546 428 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 PNMA8CA0A1B0GUJ8 204 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 YPEL1O60688 119 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 RGS11O94810 467 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 PSMB8P28062 276 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 RAB25P57735 213 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 MMDQ15546 238 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 ZNF585BQ52M93 769 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 C6orf141Q5SZD1 244 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 C9orf66Q5T8R8 295 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 SIGIRRQ6IA17 410 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 LAIR2Q6ISS4 152 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 AHSA2Q719I0 299 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 ODF3L1Q8IXM7 274 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 MS4A15Q8N5U1 240 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 MRPL30Q8TCC3 161 aaKnown RBP5.64□□□□□ -1.51
USP54-208ENST00000461520 C4orf3Q8WVX3 66 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 GALMQ96C23 342 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 KCTD7Q96MP8 289 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 DUX3Q96PT4 197 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 NEDD4LQ96PU5 975 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 YPEL2Q96QA6 119 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 ABHD14AQ9BUJ0 271 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 ZNF107Q9UII5 783 aaPredicted RBP5.64□□□□□ -1.51
USP54-208ENST00000461520 ERGIC3Q9Y282 383 aa5.64□□□□□ -1.51
USP54-208ENST00000461520 DYNC2H1Q8NCM8 4307 aaKnown RBP5.64□□□□□ -1.51
USP54-208ENST00000461520 BIRC6Q9NR09 4857 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ANKRD65E5RJM6 399 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 HLA-DRB1P01911 266 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 GNAO1P09471 354 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ACTBP60709 375 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 GNMTQ14749 295 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 RCN1Q15293 331 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 DEFB136Q30KP8 78 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ACSM3Q53FZ2 586 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 RNLSQ5VYX0 342 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 GLT8D1Q68CQ7 371 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 FAM71F2Q6NXP2 309 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ZNF833PQ6ZTB9 187 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 BPIFB6Q8NFQ5 453 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 MYOZ3Q8TDC0 251 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 PHYHIPQ92561 330 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 FAM46BQ96A09 425 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ZNF479Q96JC4 524 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 UBE2E2Q96LR5 201 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ZNF251Q9BRH9 671 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 FKBP14Q9NWM8 211 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 PIPOXQ9P0Z9 390 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 ABRACLQ9P1F3 81 aa5.63□□□□□ -1.51
USP54-208ENST00000461520 SAA2-SAA4A0A096LPE2 208 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 IGHV7-81A0A0B4J1V7 117 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 CASQ2O14958 399 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 NBR2O15453 112 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 NDUFA3O95167 84 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 CDK1P06493 297 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 OR8U8P0C7N1 319 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 SAA2P0DJI9 122 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 SLC2A2P11168 524 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 MYF6P23409 242 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 CHATP28329 748 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 PPP1CCP36873 323 aaKnown RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 INSL3P51460 131 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 LUMP51884 338 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 RPS27AP62979 156 aaKnown RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 RUNX1Q01196 453 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 GABPB1Q06547 395 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 HMGN3Q15651 99 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 C5orf64Q2M2E5 130 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 C1orf100Q5SVJ3 147 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 OGFRL1Q5TC84 451 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 LIN54Q6MZP7 749 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 LRRTM1Q86UE6 522 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 ZNF491Q8N8L2 437 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 NPBQ8NG41 125 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 OR2AK2Q8NG84 335 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 OR11H1Q8NG94 326 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 KCNG3Q8TAE7 436 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 NPIPB3Q92617 1050 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 NABP2Q9BQ15 211 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 SULT4A1Q9BR01 284 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 MND1Q9BWT6 205 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 TM2D1Q9BX74 207 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 TMEM59Q9BXS4 323 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 MRPL20Q9BYC9 149 aaKnown RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 VCXQ9H320 206 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 OR51J1Q9H342 316 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 GHITMQ9H3K2 345 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 RIMS4Q9H426 269 aaPredicted RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 KIAA1456Q9P272 454 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 VSIG4Q9Y279 399 aa5.62□□□□□ -1.51
USP54-208ENST00000461520 LSM4Q9Y4Z0 139 aaKnown RBP5.62□□□□□ -1.51
USP54-208ENST00000461520 TRAV41A0A0B4J266 112 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 DPPA5A6NC42 116 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 OR5H14A6NHG9 310 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 TMEM14DPA8MWL7 114 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 SEC14L6B5MCN3 397 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms