RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 ZNF383Q8NA42 475 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 OR5M8Q8NGP6 311 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 LGALS14Q8TCE9 139 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 C4orf3Q8WVX3 66 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 VSIG4Q9Y279 399 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 SPDEFO95238 335 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 IGKV1-16P04430 117 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 CTXN2P0C2S0 81 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 LINC00205P59089 165 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 PSG5Q15238 335 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 RTL8BQ17RB0 113 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 DEFB121Q5J5C9 76 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 HACD4Q5VWC8 232 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 TCTEX1D1Q8N7M0 179 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 OR11H1Q8NG94 326 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 UBE2E2Q96LR5 201 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 TOLLIPQ9H0E2 274 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 KLK15Q9H2R5 256 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 SDHAF2Q9NX18 166 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 RHBDL2Q9NX52 303 aa12.12□□□□□ -0.47
LIMS1-210ENST00000449684 ELF5Q9UKW6 265 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-210ENST00000449684 TMEM235A6NFC5 223 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 J3QRK9 145 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 FCN1O00602 326 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 SLC25A17O43808 307 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 PROP1O75360 226 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 CNIH1O95406 144 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 CLEC2LP0C7M8 214 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 RAB9AP51151 201 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 TAGLNQ01995 201 aaKnown RBP12.11□□□□□ -0.47
LIMS1-210ENST00000449684 TIMM50Q3ZCQ8 353 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 UNQ5815/PRO19632Q6UWF5 114 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 Q6ZS49 121 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 PPP1R27Q86WC6 154 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 ZNF491Q8N8L2 437 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 OR5B12Q96R08 314 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 DCSTAMPQ9H295 470 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 RNF167Q9H6Y7 350 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMS1-210ENST00000449684 GAB2Q9UQC2 676 aa12.11□□□□□ -0.47
LIMS1-210ENST00000449684 FOXA2Q9Y261 457 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-210ENST00000449684 SHOXO15266 292 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 CA2P00918 260 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 IGLV1-40P01703 118 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 RRASP10301 218 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 LGALS7P47929 136 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 GNB1P62873 340 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 NDPQ00604 133 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 ACTBL2Q562R1 376 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 PYHIN1Q6K0P9 492 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 ZNF562Q6V9R5 426 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 MINDY2Q8NBR6 621 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 NUDCD2Q8WVJ2 157 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 ADTRPQ96IZ2 230 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 HARBI1Q96MB7 349 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 FAM103A1Q9BTL3 118 aaKnown RBP12.1□□□□□ -0.47
LIMS1-210ENST00000449684 ETV7Q9Y603 341 aa12.1□□□□□ -0.47
LIMS1-210ENST00000449684 A0A087WXM4 84 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 OR8U8P0C7N1 319 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 LUMP51884 338 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-210ENST00000449684 SCAND1P57086 179 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 KRTAP10-11P60412 298 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 ZNF616Q08AN1 781 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 FXYD3Q14802 87 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 C9orf66Q5T8R8 295 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 H1FOOQ8IZA3 346 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-210ENST00000449684 BVESQ8NE79 360 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 LFNGQ8NES3 379 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 TSPAN14Q8NG11 270 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 OR1N2Q8NGR9 330 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 GRPEL2Q8TAA5 225 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 ARPC1AQ92747 370 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 GNB4Q9HAV0 340 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 DIABLOQ9NR28 239 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 ZNF355PQ9NSJ1 428 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 FBXO7Q9Y3I1 522 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 NUBP2Q9Y5Y2 271 aa12.09□□□□□ -0.47
LIMS1-210ENST00000449684 DNAH3Q8TD57 4116 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 TRAV18A0A075B6X5 111 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 IGKV1D-8A0A087WSZ0 117 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 TNFAIP8O95379 198 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 NFYAP23511 347 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-210ENST00000449684 CRIP2P52943 208 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-210ENST00000449684 ARPC4P59998 168 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 DGCR2P98153 550 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 EGFEM1PQ0D2K5 195 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 ZNF260Q3ZCT1 412 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 AKIRIN2Q53H80 203 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 CNIH2Q6PI25 160 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 CASTOR1Q8WTX7 329 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 MS4A10Q96PG2 267 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 DCUN1D5Q9BTE7 237 aa12.08□□□□□ -0.48
LIMS1-210ENST00000449684 SEC14L6B5MCN3 397 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 K7EIL1 84 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 AIREO43918 545 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 TUSC2O75896 110 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 SLC22A5O76082 557 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 TPPP2P59282 170 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 VMA21Q3ZAQ7 101 aa12.07□□□□□ -0.48
LIMS1-210ENST00000449684 CROCCP3Q8IVE0 287 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms