RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 AKR1C3P42330 323 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CCR6P51684 374 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF133P52736 654 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SNRPD2P62316 118 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 RPS24P62847 133 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 HERVK_113P63121 156 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 DEFA6Q01524 100 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 NDUFA5Q16718 116 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IAH1Q2TAA2 248 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SBSNQ6UWP8 590 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OR52L1Q8NGH7 329 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OR5H2Q8NGV7 314 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF501Q96CX3 271 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 VSIG2Q96IQ7 327 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 NMNAT3Q96T66 252 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SLC17A9Q9BYT1 436 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ALX4Q9H161 411 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ACER3Q9NUN7 267 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SPANXCQ9NY87 97 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 MRPL27Q9P0M9 148 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 TAC3Q9UHF0 121 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 PRNDQ9UKY0 176 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ASB4Q9Y574 426 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ASTN1O14525 1302 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IGKV1-27A0A075B6S5 117 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TRAPPC13A5PLN9 417 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 PI15O43692 258 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SMIM17P0DL12 118 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ADRB3P13945 408 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 PSMD8P48556 350 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LHX2P50458 406 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CKS1BP61024 79 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RUNX1Q01196 453 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CAV1Q03135 178 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LY6DQ14210 128 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C1orf194Q5T5A4 169 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C9orf64Q5T6V5 341 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C11orf87Q6NUJ2 197 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF497Q6ZNH5 498 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM19A3Q7Z5A8 133 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR5J2Q8NH18 312 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 KCNIP2Q9NS61 270 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 A2MP01023 1474 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 IGSF23A1L1A6 192 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C15orf65H3BRN8 121 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 DNASE2O00115 360 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 KPNA4O00629 521 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 FFAR1O14842 300 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 BET1O15155 118 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 IGKV2-30P06310 120 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 NMUP48645 174 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 EIF4EBP2Q13542 120 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 APOFQ13790 326 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SMIM21Q3B7S5 101 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM78AQ5JUQ0 283 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LYRM7Q5U5X0 104 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 VN1R4Q7Z5H5 301 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ZDHHC22Q8N966 263 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR11H6Q8NGC7 330 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LYZL4Q96KX0 146 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 FOPNLQ96NB1 174 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TRIB3Q96RU7 358 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 MED28Q9H204 178 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00597Q9H2U6 94 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 DHCR7Q9UBM7 475 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ADGBQ8N7X0 1667 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ADGRB3O60242 1522 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 MYO9AB2RTY4 2548 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 VIRMAQ69YN4 1812 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RRBP1Q9P2E9 1410 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR4C45A6NMZ5 311 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 KRBOX1C9JBD0 128 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SULT1C4O75897 302 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CRYGDP07320 174 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C8GP07360 202 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ADRA2AP08913 450 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SEC11BP0C7V7 166 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TDGF1P13385 188 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CTSEP14091 401 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CMPK1P30085 196 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CXCL5P42830 114 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TDGF1P3P51864 188 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 AWAT2Q6E213 333 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SMIM29Q86T20 159 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C11orf53Q8IXP5 236 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 KRTCAP2Q8N6L1 136 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM75Q8N9X5 138 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR8B12Q8NGG6 310 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR10G4Q8NGN3 311 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 KLK6Q92876 244 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 HSPB9Q9BQS6 159 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CACYBPQ9HB71 228 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RTL1A6NKG5 1358 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 UGGT1Q9NYU2 1555 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SSH2Q76I76 1423 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 LRRIQ1Q96JM4 1722 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 EPOPA6NHQ4 379 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR5H1A6NKK0 313 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RFPL4AA6NLU0 287 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms