RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ADTRPQ96IZ2 230 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 AUNIPQ9H7T9 357 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 METTL1Q9UBP6 276 aaKnown RBP11.92□□□□□ -0.5
LIMS3-201ENST00000437679 ANXA10Q9UJ72 324 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 TRAV41A0A0B4J266 112 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 J3QRK9 145 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 NFYAP23511 347 aaPredicted RBP11.91□□□□□ -0.5
LIMS3-201ENST00000437679 LUMP51884 338 aaPredicted RBP11.91□□□□□ -0.5
LIMS3-201ENST00000437679 ARPC4P59998 168 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 PSG5Q15238 335 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 RTL8BQ17RB0 113 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 BEAN1Q3B7T3 259 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 PDLIM3Q53GG5 364 aaPredicted RBP11.91□□□□□ -0.5
LIMS3-201ENST00000437679 OXLD1Q5BKU9 147 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 C18orf65Q6ZTR6 163 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 C8orf86Q6ZUL3 223 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 SAMD12Q8N8I0 201 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 RNF152Q8N8N0 203 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 ABHD5Q8WTS1 349 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 SLC25A46Q96AG3 418 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 OR2W1Q9Y3N9 320 aa11.91□□□□□ -0.5
LIMS3-201ENST00000437679 G3V318 75 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 FCN1O00602 326 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 XRCC3O43542 346 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 SLC22A5O76082 557 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 SMIM18P0DKX4 95 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 RRASP10301 218 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 LGALS7P47929 136 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 VBP1P61758 197 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 NCS1P62166 190 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 CX3CL1P78423 397 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 TMEM65Q6PI78 240 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 LCNL1Q6ZST4 164 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 ZNF645Q8N7E2 425 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 BVESQ8NE79 360 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 BEST4Q8NFU0 473 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 KCTD12Q96CX2 325 aaKnown RBP11.9□□□□□ -0.5
LIMS3-201ENST00000437679 C5orf30Q96GV9 206 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 CLCC1Q96S66 551 aa11.9□□□□□ -0.5
LIMS3-201ENST00000437679 SLC25A17O43808 307 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 HLA-DQB1P01920 261 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 PSMB8P28062 276 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 PPIFP30405 207 aaKnown RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 DUTP33316 252 aaKnown RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 MYCNOSP40205 109 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 CBX5P45973 191 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 CDX1P47902 265 aaPredicted RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 NDPQ00604 133 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 TMEM267Q0VDI3 215 aaPredicted RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 ECSCRQ19T08 205 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 TMEM69Q5SWH9 247 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 KPRPQ5T749 579 aaPredicted RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 ETV3LQ6ZN32 361 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 HOGA1Q86XE5 327 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 GVQW1Q8N7I0 195 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 LINC00482Q8N8I6 264 aa11.89□□□□□ -0.51
LIMS3-201ENST00000437679 RCC1LQ96I51 464 aaKnown RBP11.89□□□□□ -0.51
LIMS3-201ENST00000437679 SHOXO15266 292 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 DUS4LO95620 317 aaKnown RBP11.88□□□□□ -0.51
LIMS3-201ENST00000437679 CA2P00918 260 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 IGLL1P15814 213 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 CRIP2P52943 208 aaPredicted RBP11.88□□□□□ -0.51
LIMS3-201ENST00000437679 TMEM177Q53S58 311 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 ZNF562Q6V9R5 426 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 MRPL41Q8IXM3 137 aaKnown RBP11.88□□□□□ -0.51
LIMS3-201ENST00000437679 TCTEX1D1Q8N7M0 179 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 HARBI1Q96MB7 349 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 MRPS26Q9BYN8 205 aaKnown RBP11.88□□□□□ -0.51
LIMS3-201ENST00000437679 IFT46Q9NQC8 304 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 NECAP2Q9NVZ3 263 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 FOXA2Q9Y261 457 aaPredicted RBP11.88□□□□□ -0.51
LIMS3-201ENST00000437679 A3GALT2U3KPV4 340 aa11.88□□□□□ -0.51
LIMS3-201ENST00000437679 A0A1W2PN81 502 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 CCL24O00175 119 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 TUSC2O75896 110 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 IGLV1-40P01703 118 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 FCER2P06734 321 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 PTHLHP12272 177 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 CHRNA7P36544 502 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 RORCP51449 518 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 PPP1R27Q86WC6 154 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 ANKRD13BQ86YJ7 626 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 MINDY2Q8NBR6 621 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 ACOT12Q8WYK0 555 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 DDB2Q92466 427 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 COMMD3Q9UBI1 195 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 RBMX2Q9Y388 322 aaKnown RBP11.87□□□□□ -0.51
LIMS3-201ENST00000437679 FBXO7Q9Y3I1 522 aa11.87□□□□□ -0.51
LIMS3-201ENST00000437679 IGKV1D-13A0A0B4J2D9 117 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 MEIS3P1A6NDR6 274 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 LINC00473A8K010 186 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 GABARAPO95166 117 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 CNIH1O95406 144 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 CRYZL1O95825 349 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 IGLV2-23P01705 113 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 IGKV1-13P0DP09 117 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 FCGR2CP31995 323 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 TAS2R20P59543 309 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 FXYD3Q14802 87 aa11.86□□□□□ -0.51
LIMS3-201ENST00000437679 VMA21Q3ZAQ7 101 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms