RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 KIAA2026Q5HYC2 2103 aa9.82□□□□□ -0.84
PTPRF-208ENST00000437607 DNAH9Q9NYC9 4486 aa9.82□□□□□ -0.84
PTPRF-208ENST00000437607 A0A087X0M5 115 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 A0A1B0GX30 115 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 TOR1AO14656 332 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 SLC31A2O15432 143 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 PRAF2O60831 178 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 PI3P19957 117 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 UBE2MP61081 183 aaKnown RBP9.81□□□□□ -0.84
PTPRF-208ENST00000437607 MSMO1Q15800 293 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 PHLDA2Q53GA4 152 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 C1orf122Q6ZSJ8 110 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 Q6ZSV7 163 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 SLC25A48Q6ZT89 311 aaKnown RBP9.81□□□□□ -0.84
PTPRF-208ENST00000437607 PDZD9Q8IXQ8 264 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 ABHD12Q8N2K0 398 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 ZNF439Q8NDP4 499 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 ZNF596Q8TC21 504 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 TNFRSF14Q92956 283 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 MARVELD1Q9BSK0 173 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 RSRP1Q9BUV0 290 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 IFI27L2Q9H2X8 130 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 SLC2A9Q9NRM0 540 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 PIPOXQ9P0Z9 390 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 GPR132Q9UNW8 380 aa9.81□□□□□ -0.84
PTPRF-208ENST00000437607 A0A1W2PPE3 182 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 ANXA7P20073 488 aaKnown RBP9.8□□□□□ -0.84
PTPRF-208ENST00000437607 VAMP1P23763 118 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 PIGPP57054 158 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 CATR1Q13166 79 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 KLRD1Q13241 179 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 TATDN3Q17R31 274 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 C4orf46Q504U0 113 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 ZNF818PQ6ZRF7 136 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 LYG1Q8N1E2 194 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 PNKDQ8N490 385 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 C11orf42Q8N5U0 333 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 LINC00311Q8N616 119 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 Q8N7P7 452 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 C8orf31Q8N9H6 132 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.8□□□□□ -0.84
PTPRF-208ENST00000437607 ZBTB34Q8NCN2 500 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 AKR1E2Q96JD6 320 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 C5orf66Q9H5L9 145 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 GPN1Q9HCN4 374 aaPredicted RBP9.8□□□□□ -0.84
PTPRF-208ENST00000437607 CCL28Q9NRJ3 127 aa9.8□□□□□ -0.84
PTPRF-208ENST00000437607 KMT2CQ8NEZ4 4911 aaKnown RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 SAA2-SAA4A0A096LPE2 208 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 TEX13DA0A0J9YY54 714 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 J3QR06 171 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 RAB29O14966 203 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 HLA-AP01891 365 aaKnown RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 ARG1P05089 322 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 SAA2P0DJI9 122 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 AKR1C4P17516 323 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 PRRX1P54821 245 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 DLX1P56177 255 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 RND3P61587 244 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 HLA-DRB5Q30154 266 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 CT45A1Q5HYN5 189 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 SGPP2Q8IWX5 399 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 DRAM1Q8N682 238 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 BEND2Q8NDZ0 799 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 BVESQ8NE79 360 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 CT45A3Q8NHU0 189 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 FAM110DQ8TAY7 271 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 RTN4IP1Q8WWV3 396 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 ABHD14BQ96IU4 210 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 S1PR3Q99500 378 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 GHITMQ9H3K2 345 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 C16orf95Q9H693 158 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 LIN7CQ9NUP9 197 aaKnown RBP9.79□□□□□ -0.84
PTPRF-208ENST00000437607 RNF150Q9ULK6 438 aa9.79□□□□□ -0.84
PTPRF-208ENST00000437607 CRYM-AS1A6NIL9 109 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 M0R1X1 148 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 TNFSF12O43508 249 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 CREBL2O60519 120 aaPredicted RBP9.78□□□□□ -0.84
PTPRF-208ENST00000437607 OR4E1P0C645 316 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 ANXA3P12429 323 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 GNRHRP30968 328 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 MECP2P51608 486 aaKnown RBP9.78□□□□□ -0.84
PTPRF-208ENST00000437607 PRB3Q04118 309 aaPredicted RBP9.78□□□□□ -0.84
PTPRF-208ENST00000437607 CBX3Q13185 183 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 TMEM128Q5BJH2 165 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 UTF1Q5T230 341 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 ZNF626Q68DY1 528 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 FAM71F2Q6NXP2 309 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 KCTD9Q7L273 389 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 SLC25A42Q86VD7 318 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 ADAD2Q8NCV1 583 aaKnown RBP9.78□□□□□ -0.84
PTPRF-208ENST00000437607 OR51H1Q8NH63 302 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 TCTEX1D2Q8WW35 142 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 CAPSLQ8WWF8 208 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 TMEM230Q96A57 120 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 SEC22CQ9BRL7 303 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 AGMATQ9BSE5 352 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 RTBDNQ9BSG5 229 aaPredicted RBP9.78□□□□□ -0.84
PTPRF-208ENST00000437607 NAA60Q9H7X0 242 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 SDHAF2Q9NX18 166 aa9.78□□□□□ -0.84
PTPRF-208ENST00000437607 ZNRD1Q9P1U0 126 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms