RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NUDT3O95989 172 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 PNRC1Q12796 327 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 DMKNQ6E0U4 476 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 SAP25Q8TEE9 199 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 RAXQ9Y2V3 346 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 DSCAML1Q8TD84 2053 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 COL13A1Q5TAT6 717 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FOXS1O43638 330 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 CDCP2Q5VXM1 449 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM24BQ8N5W8 94 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ZBTB34Q8NCN2 500 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 PRSS8Q16651 343 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 AWAT1Q58HT5 328 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM27BQ5VT28 67 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 RAB33BQ9H082 229 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 PRDM6Q9NQX0 595 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ACACBO00763 2458 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 CA11O75493 328 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 COX6A1P12074 109 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM74A4Q5TZK3 123 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 DPPA3Q6W0C5 159 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 TMEM52Q8NDY8 209 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 OR52M1Q8NGK5 317 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 TRAV20A0A0B4J274 112 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 IGKV3OR2-268A0A0C4DH90 116 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 OR2H2O95918 312 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM106AQ4KMX7 169 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF826PQ6ZT77 177 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 VKORC1L1Q8N0U8 176 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 QTRT1Q9BXR0 403 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ABCA2Q9BZC7 2435 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 TMEM189A5PLL7 270 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 PLAUP00749 431 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 DCAF12L2Q5VW00 463 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 FOXJ2Q9P0K8 574 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 VAX2Q9UIW0 290 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 THY1P04216 161 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 CENPVQ7Z7K6 275 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF107Q9UII5 783 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 LNP1A1A4G5 178 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 RGP1Q92546 391 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 ANGPTL4Q9BY76 406 aa10.42□□□□□ -0.74
CCDC88A-207ENST00000436346 PSG4Q00888 419 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 BVESQ8NE79 360 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 CLEC7AQ9BXN2 247 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 OR4B1Q8NGF8 309 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 SP7Q8TDD2 431 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 LEAP2Q969E1 77 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 LTBP1Q14766 1721 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 KLK13Q9UKR3 277 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 KLHDC2Q9Y2U9 406 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 OGG1O15527 345 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 MEOX2P50222 304 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 RAG2P55895 527 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 DLX6P56179 175 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 OR4C45A6NMZ5 311 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 MAS1LP35410 378 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 BSPH1Q075Z2 132 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 LRRC75BQ2VPJ9 315 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 SMUG1Q53HV7 270 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 UNQ9370/PRO34162Q6UXP9 181 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 LINC01560Q8TB33 94 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 HSPB7Q9UBY9 170 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 NMUP48645 174 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 KLRB1Q12918 225 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 STPG3Q8N7X2 389 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 PPIAL4CA0A0B4J2A2 164 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 PPIAL4GP0DN37 164 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF324O75467 553 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 FCGR3AP08637 254 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 TGIF1Q15583 401 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 HLA-DRB5Q30154 266 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 PRO1933Q9H354 126 aa10.41□□□□□ -0.74
CCDC88A-207ENST00000436346 H0Y980 276 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 FGF5P12034 268 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 ZFYVE26Q68DK2 2539 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 DLL1O00548 723 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 PAGE4O60829 102 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 STAG3L2P0CL84 134 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 HMGA2P52926 109 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 ARF6P62330 175 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 MARVELD1Q9BSK0 173 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 GCGP01275 180 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 HOXA6P31267 233 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 RAB37Q96AX2 223 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 OPN4Q9UHM6 478 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 RELQ04864 619 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 OR4C13Q8NGP0 309 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 RSG1Q9BU20 258 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 FUT9Q9Y231 359 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 LCN2P80188 198 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 BSXQ3C1V8 233 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 SNAI3Q3KNW1 292 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 SRXN1Q9BYN0 137 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 TLNRD1Q9H1K6 362 aa10.4□□□□□ -0.74
CCDC88A-207ENST00000436346 M0R143 59 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 OR2A4O95047 310 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 GZMKP49863 264 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 ZNF880Q6PDB4 577 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms