RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HARBI1Q96MB7 349 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 GFI1Q99684 422 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 RNF5Q99942 180 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 AGMATQ9BSE5 352 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 PECRQ9BY49 303 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 OR2D2Q9H210 308 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 GAR1Q9NY12 217 aaKnown RBP11.15□□□□□ -0.62
SDC1-204ENST00000429035 RDH8Q9NYR8 311 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 LSM2Q9Y333 95 aaKnown RBP11.15□□□□□ -0.62
SDC1-204ENST00000429035 ARPC1BO15143 372 aaKnown RBP11.14□□□□□ -0.63
SDC1-204ENST00000429035 CD3GP09693 182 aa11.14□□□□□ -0.63
SDC1-204ENST00000429035 APELAP0DMC3 54 aa11.14□□□□□ -0.63
SDC1-204ENST00000429035 ZP3P21754 424 aa11.14□□□□□ -0.63
SDC1-204ENST00000429035 PHB2Q99623 299 aa11.14□□□□□ -0.63
SDC1-204ENST00000429035 CCDC90BQ9GZT6 254 aa11.14□□□□□ -0.63
SDC1-204ENST00000429035 RANGRFQ9HD47 186 aaPredicted RBP11.14□□□□□ -0.63
SDC1-204ENST00000429035 RBM7Q9Y580 266 aaKnown RBP11.14□□□□□ -0.63
SDC1-204ENST00000429035 TNCP24821 2201 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 IGKV1-6A0A0C4DH72 117 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 TRDCB7Z8K6 153 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 CALRP27797 417 aaKnown RBP11.13□□□□□ -0.63
SDC1-204ENST00000429035 HES5Q5TA89 166 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 OR56B1Q8NGI3 324 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 COA4Q9NYJ1 87 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 HSF4Q9ULV5 492 aa11.13□□□□□ -0.63
SDC1-204ENST00000429035 DYNC2H1Q8NCM8 4307 aaKnown RBP11.13□□□□□ -0.63
SDC1-204ENST00000429035 A0A075B6Q4 140 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 A0A0G2JLM5 398 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 H3BUA1 57 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 CASQ2O14958 399 aaPredicted RBP11.12□□□□□ -0.63
SDC1-204ENST00000429035 LDLRAD4O15165 306 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 SHOXO15266 292 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 FABP7O15540 132 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 DENRO43583 198 aaKnown RBP11.12□□□□□ -0.63
SDC1-204ENST00000429035 PROP1O75360 226 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 ARL6IP5O75915 188 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 TMEM50BP56557 158 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 SYNJ2BPP57105 145 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 PJVKQ0ZLH3 352 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 RNLSQ5VYX0 342 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 MAFIPQ8WZ33 124 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 PTX4Q96A99 478 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 FAM3DQ96BQ1 224 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 ISOC1Q96CN7 298 aa11.12□□□□□ -0.63
SDC1-204ENST00000429035 FOXI3A8MTJ6 420 aaPredicted RBP11.11□□□□□ -0.63
SDC1-204ENST00000429035 MPPED1O15442 326 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 IGLV1-51P01701 117 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 LGALS7P47929 136 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 PLA2G7Q13093 441 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 PLAC9Q5JTB6 97 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 TMEM91Q6ZNR0 172 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 FAM89BQ8N5H3 189 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.11□□□□□ -0.63
SDC1-204ENST00000429035 BVESQ8NE79 360 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 OR4A4PQ8NGN8 299 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 OR9G4Q8NGQ1 327 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 OR10J5Q8NHC4 309 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 CITED4Q96RK1 184 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 TM2D3Q9BRN9 247 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 GINS4Q9BRT9 223 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 SDHAF2Q9NX18 166 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 ADAM30Q9UKF2 790 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 TPRKBQ9Y3C4 175 aa11.11□□□□□ -0.63
SDC1-204ENST00000429035 TMEM272A0A1B0GTI8 110 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 ANKRD65E5RJM6 399 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 RGS10O43665 173 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 IGLV2-23P01705 113 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 FCGR3AP08637 254 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 PSMA1P25786 263 aaKnown RBP11.1□□□□□ -0.63
SDC1-204ENST00000429035 SERPINB10P48595 397 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 AQP4P55087 323 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 SSBP2P81877 361 aaPredicted RBP11.1□□□□□ -0.63
SDC1-204ENST00000429035 IRF3Q14653 427 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 TRAM1Q15629 374 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 TNXAQ16473 311 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 RTL8BQ17RB0 113 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 RPEL1Q2QD12 228 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 C2orf76Q3KRA6 126 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 IGSF11Q5DX21 431 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 GTSCR1Q86UQ5 136 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 ACOT12Q8WYK0 555 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 RAB3CQ96E17 227 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 V9GY05 133 aa11.1□□□□□ -0.63
SDC1-204ENST00000429035 TRBV12-3P01733 135 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 GSTT2P0CG29 244 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 GSTT2BP0CG30 244 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 FABP5Q01469 135 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 MLLT11Q13015 90 aaPredicted RBP11.09□□□□□ -0.63
SDC1-204ENST00000429035 MOGAT2Q3SYC2 334 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 VMA21Q3ZAQ7 101 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 IDO2Q6ZQW0 420 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 Q8N1Y9 231 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 C5orf30Q96GV9 206 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 CABLES2Q9BTV7 478 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 TINAGL1Q9GZM7 467 aaPredicted RBP11.09□□□□□ -0.63
SDC1-204ENST00000429035 TUBA4BQ9H853 241 aa11.09□□□□□ -0.63
SDC1-204ENST00000429035 PEF1Q9UBV8 284 aaKnown RBP11.09□□□□□ -0.63
SDC1-204ENST00000429035 ZNF230Q9UIE0 474 aaPredicted RBP11.09□□□□□ -0.63
SDC1-204ENST00000429035 TENM2Q9NT68 2774 aa11.08□□□□□ -0.64
SDC1-204ENST00000429035 A0A0B4J203 849 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms