RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 CXCL2P19875 107 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 CXCL3P19876 107 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 PRPS1L1P21108 318 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 FGF7P21781 194 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ARR3P36575 388 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 TGFBR1P36897 503 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 KIR3DL2P43630 455 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 GZMMP51124 257 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 MTPNP58546 118 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 SLC35B1P78383 322 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 RPL18AQ02543 176 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 SSBP1Q04837 148 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 TNFRSF9Q07011 255 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 EBI3Q14213 229 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 MAPK14Q16539 360 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ATP6V1FQ16864 119 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 NDUFAF6Q330K2 333 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 PYCR3Q53H96 274 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 AKR1C8PQ5T2L2 129 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 HENMT1Q5T8I9 393 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 Q5W150 140 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ZNF660Q6AZW8 331 aaPredicted RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 OR10K2Q6IF99 312 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 APOBEC3HQ6NTF7 200 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 MED27Q6P2C8 311 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ALKAL2Q6UX46 152 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 CYHR1Q6ZMK1 362 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 GID4Q8IVV7 300 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 HS3ST5Q8IZT8 346 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 KCNRGQ8N5I3 272 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ACBD4Q8NC06 268 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 OR4K2Q8NGD2 314 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 OR2D3Q8NGH3 330 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 OR52P1PQ8NH57 321 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 OR10J5Q8NHC4 309 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 CDS1Q92903 461 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 OTUB2Q96DC9 234 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 CMBLQ96DG6 245 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 S100A16Q96FQ6 103 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 PEBP4Q96S96 227 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 RSG1Q9BU20 258 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ZNF426Q9BUY5 554 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 FGF23Q9GZV9 251 aaPredicted RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 ZNF442Q9H7R0 627 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 PLEKHA1Q9HB21 404 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 LRTM1Q9HBL6 345 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ASCL3Q9NQ33 180 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 TREX1Q9NSU2 369 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 UQCC1Q9NVA1 299 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 LSM2Q9Y333 95 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 WIF1Q9Y5W5 379 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 KIDINS220Q9ULH0 1771 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SCN4AP35499 1836 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 MYH6P13533 1939 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 MYH4Q9Y623 1939 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 TRAV1-2A0A0B4J238 106 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 RNASEK-C17orf49H0YIS7 233 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 H0YJW9 148 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 GABARAPH6UMI1 98 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 FAAHO00519 579 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 HMGB3O15347 200 aaKnown RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 TOX3O15405 576 aaPredicted RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 ARPC5O15511 151 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 FGF16O43320 207 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 GLSO94925 669 aaPredicted RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 NDUFB6O95139 128 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 WISP3O95389 354 aaPredicted RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 HLA-DQA1P01909 254 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 CRHP06850 196 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 MRPL3P09001 348 aaKnown RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 UCHL1P09936 223 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 CD79AP11912 226 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 OR10A3P58181 314 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R31P59538 309 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 RANP62826 216 aaKnown RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 REEP5Q00765 189 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 RSU1Q15404 277 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 DEFB115Q30KQ5 88 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SLC36A2Q495M3 483 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 ZNF684Q5T5D7 378 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 CPTPQ5TA50 214 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 GLT8D1Q68CQ7 371 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SPNS3Q6ZMD2 512 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SSX6Q7RTT6 188 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 UBALD2Q8IYN6 164 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 ACBD7Q8N6N7 88 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 OR4C6Q8NH72 309 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 PIGXQ8TBF5 258 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 HAVCR2Q8TDQ0 301 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 EEF1AKMT1Q8WVE0 214 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 DNAJB3Q8WWF6 145 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 TMEM234Q8WY98 164 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 NEURL3Q96EH8 262 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 KCNS1Q96KK3 526 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SLC25A21Q9BQT8 299 aaPredicted RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 ACBD6Q9BR61 282 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 ZNF2Q9BSG1 426 aaPredicted RBP2.84□□□□□ -1.95
VPS54-204ENST00000416400 EMC6Q9BV81 110 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 PBDC1Q9BVG4 233 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 GGTLC1Q9BX51 225 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms