RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C3orf80F5H4A9 247 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 HBZP02008 142 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 FOLR2P14207 255 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 PPP1CCP36873 323 aaKnown RBP12.34□□□□□ -0.43
USP4-203ENST00000415188 CFHR2P36980 270 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 EIF4EBP1Q13541 118 aaPredicted RBP12.34□□□□□ -0.43
USP4-203ENST00000415188 RHEBQ15382 184 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 Q6ZR03 302 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 OR1L1Q8NH94 360 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 SCGB1C1Q8TD33 95 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 COQ2Q96H96 371 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 PSENENQ9NZ42 101 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 MAP1AP78559 2803 aaPredicted RBP12.34□□□□□ -0.43
USP4-203ENST00000415188 WNT9BO14905 357 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 TSPAN9O75954 239 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 SCAF4O95104 1147 aaKnown RBP12.34□□□□□ -0.43
USP4-203ENST00000415188 HTD2P86397 168 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 FAM27E3Q08E93 113 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 TIMM23BQ5SRD1 257 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 AVPI1Q5T686 147 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 PRAMEF6Q5VXH4 476 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 SPSB3Q6PJ21 355 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 ZNF66Q6ZN08 573 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 Q6ZRM9 215 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 TMEM217Q8N7C4 229 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 PPP1R35Q8TAP8 253 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 TMUB1Q9BVT8 246 aa12.34□□□□□ -0.43
USP4-203ENST00000415188 OPN3Q9H1Y3 402 aaPredicted RBP12.34□□□□□ -0.43
USP4-203ENST00000415188 CHD3Q12873 2000 aaKnown RBP12.33□□□□□ -0.44
USP4-203ENST00000415188 RBFOX3A6NFN3 312 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 ADH4P08319 380 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 P0C879 139 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 CD99P14209 185 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 ZNF16P17020 682 aaPredicted RBP12.33□□□□□ -0.44
USP4-203ENST00000415188 COL10A1Q03692 680 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 KRBOX4Q5JUW0 171 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 ZNF506Q5JVG8 444 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 SLC25A24Q6NUK1 477 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 ZNF474Q6S9Z5 364 aaPredicted RBP12.33□□□□□ -0.44
USP4-203ENST00000415188 ZNF826PQ6ZT77 177 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 TGIF2LYQ8IUE0 185 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 EGLN1Q9GZT9 426 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 OR2D2Q9H210 308 aa12.33□□□□□ -0.44
USP4-203ENST00000415188 VPS13CQ709C8 3753 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 SRRM5B3KS81 715 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 SPINT2O43291 252 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 PPIHO43447 177 aaKnown RBP12.32□□□□□ -0.44
USP4-203ENST00000415188 LY86O95711 162 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 NFYBP25208 207 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 GABRA2P47869 451 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 CEBPDP49716 269 aaPredicted RBP12.32□□□□□ -0.44
USP4-203ENST00000415188 FABP6P51161 128 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 SERF2P84101 59 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 AESQ08117 197 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 FGFRL1Q8N441 504 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 ZNF525Q8N782 197 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 LRRC29Q8WV35 223 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 HSD17B10Q99714 261 aaKnown RBP12.32□□□□□ -0.44
USP4-203ENST00000415188 NCOR1P1Q9H4R4 102 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 HSPB7Q9UBY9 170 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 FBXO7Q9Y3I1 522 aa12.32□□□□□ -0.44
USP4-203ENST00000415188 COLCA2A8K830 154 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 RAB29O14966 203 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 NDUFA2O43678 99 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 NXPH3O95157 252 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 IGHV3-13P01766 116 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 HSPB1P04792 205 aaKnown RBP12.31□□□□□ -0.44
USP4-203ENST00000415188 CCKARP32238 428 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 RPS23P62266 143 aaKnown RBP12.31□□□□□ -0.44
USP4-203ENST00000415188 TMEM267Q0VDI3 215 aaPredicted RBP12.31□□□□□ -0.44
USP4-203ENST00000415188 ATP6V1FQ16864 119 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 LRRC75BQ2VPJ9 315 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 RNF212Q495C1 297 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 AWAT1Q58HT5 328 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 SOHLH1Q5JUK2 328 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 OR10G4Q8NGN3 311 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 CD300LFQ8TDQ1 290 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 EDARADDQ8WWZ3 215 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 MBD6Q96DN6 1003 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 WFIKKN1Q96NZ8 548 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 TIMM9Q9Y5J7 89 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 ACANP16112 2415 aa12.31□□□□□ -0.44
USP4-203ENST00000415188 NF1P21359 2839 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 C7orf77A4D0Y5 90 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 SIAH2O43255 324 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 GZMHP20718 246 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 PRDX2P32119 198 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 GLRXP35754 106 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 UBE2KP61086 200 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 RUNX1Q01196 453 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 TNFRSF9Q07011 255 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 DEFB113Q30KQ7 82 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 KHDC3LQ587J8 217 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 TMEM14EPQ6UXP3 125 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 THNSL2Q86YJ6 484 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 OR52L2PQ8NGH6 319 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 UBALD1Q8TB05 177 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 MRGPRDQ8TDS7 321 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 RXFP4Q8TDU9 374 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 PINX1Q96BK5 328 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms