RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DIAPH2-AS1Q14236 149 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 TGIF2LXQ8IUE1 241 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 PDZD9Q8IXQ8 264 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 PIP4P2Q8N4L2 257 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 ZNF383Q8NA42 475 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 OR5AN1Q8NGI8 311 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 CD300LFQ8TDQ1 290 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 GLYATL2Q8WU03 294 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 MITD1Q8WV92 249 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 GPHA2Q96T91 129 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 NABP2Q9BQ15 211 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 SEC22CQ9BRL7 303 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 TMUB1Q9BVT8 246 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 LIN7CQ9NUP9 197 aaKnown RBP11.53□□□□□ -0.56
SF3B1-204ENST00000414963 SHPKQ9UHJ6 478 aa11.53□□□□□ -0.56
SF3B1-204ENST00000414963 TRAV40A0A0B4J280 105 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 HLA-AP01891 365 aaKnown RBP11.52□□□□□ -0.57
SF3B1-204ENST00000414963 OR5AC1P0C628 307 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 IGHV4-38-2P0DP08 117 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 ANXA3P12429 323 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 VAMP1P23763 118 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 UCP1P25874 307 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 KIR2DS2P43631 304 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 BRWD1-AS2P59051 145 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 LINC00205P59089 165 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 HABP2Q14520 560 aaPredicted RBP11.52□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM187Q14656 261 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 CCDC144NLQ6NUI1 221 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 LHFPL4Q7Z7J7 247 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 OR8H3Q8N146 312 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 LRTM2Q8N967 370 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 DRAXINQ8NBI3 349 aaPredicted RBP11.52□□□□□ -0.57
SF3B1-204ENST00000414963 OR51H1Q8NH63 302 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 RPEQ96AT9 228 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM56Q96MV1 263 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 TP53RKQ96S44 253 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 MRPL20Q9BYC9 149 aaKnown RBP11.52□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM222Q9H0R3 208 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 PRELID3BQ9Y3B1 194 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 ALG5Q9Y673 324 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM56-RWDD3S4R434 201 aa11.52□□□□□ -0.57
SF3B1-204ENST00000414963 PIGBOS1A0A0B4J2F0 54 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 IGHV1-3A0A0C4DH29 117 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 A0A1W2PRD5 423 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 A0A1W2PRF3 423 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 A0A1W2PRM7 423 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 CREBL2O60519 120 aaPredicted RBP11.51□□□□□ -0.57
SF3B1-204ENST00000414963 CDS2O95674 445 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 RRASP10301 218 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 MC5RP33032 325 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 SRPXP78539 464 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 SP6Q3SY56 376 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 ZNF585BQ52M93 769 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 LIAT1Q6ZQX7 453 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 C9orf139Q6ZV77 190 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 OR52B4Q8NGK2 314 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 NANPQ8TBE9 248 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 TCTEX1D2Q8WW35 142 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 OR51J1Q9H342 316 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 CSPG4Q6UVK1 2322 aa11.51□□□□□ -0.57
SF3B1-204ENST00000414963 A0A1W2PPI3 338 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 H0YJW9 148 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 RPA2P15927 270 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 REG1BP48304 166 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 SLC9A3R2Q15599 337 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 ANKRD55Q3KP44 614 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 DHRS7BQ6IAN0 325 aaPredicted RBP11.5□□□□□ -0.57
SF3B1-204ENST00000414963 SPAG16Q8N0X2 631 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 IL22RA2Q969J5 263 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 MEGF9Q9H1U4 602 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM160Q9NX00 188 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 NUP50Q9UKX7 468 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 ACANP16112 2415 aa11.5□□□□□ -0.57
SF3B1-204ENST00000414963 A8MV72 311 aaPredicted RBP11.49□□□□□ -0.57
SF3B1-204ENST00000414963 SERPINE2P07093 398 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 CD99P14209 185 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 CD1BP29016 333 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 SSX2Q16385 188 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 RTL8BQ17RB0 113 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 RUSC1-AS1Q66K80 236 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 LGI3Q8N145 548 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 DYNAPQ8N1N2 210 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 C12orf45Q8N5I9 185 aaPredicted RBP11.49□□□□□ -0.57
SF3B1-204ENST00000414963 COQ8AQ8NI60 647 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 CASTOR1Q8WTX7 329 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 C17orf50Q8WW18 174 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 CFHR4Q92496 578 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 PHB2Q99623 299 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 PLEKHA2Q9HB19 425 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 HILPDAQ9Y5L2 63 aa11.49□□□□□ -0.57
SF3B1-204ENST00000414963 IGHV3OR16-10A0A075B7F0 116 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 A0A1B0GVG6 124 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 DBX1A6NMT0 343 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 FAM90A9PA6NNJ1 464 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 VGLL3A8MV65 326 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 RAMP3O60896 148 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 FCGR3BO75015 233 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 HPRT1P00492 218 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 APOA2P02652 100 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 HLA-GP17693 338 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms