RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ANGPTL5Q86XS5 388 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 RDH10Q8IZV5 341 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 FAM58AQ8N1B3 248 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 OR13C9Q8NGT0 318 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 PHYHIPQ92561 330 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 LHX4Q969G2 390 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 GAFA1Q96PS6 74 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SDHCQ99643 169 aaPredicted RBP5.08□□□□□ -1.6
USP40-202ENST00000409945 NRIP2Q9BQI9 281 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SRRQ9GZT4 340 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 ISG20L2Q9H9L3 353 aaKnown RBP5.08□□□□□ -1.6
USP40-202ENST00000409945 IGKV1D-17A0A075B6S4 117 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 IGHV3OR16-10A0A075B7F0 116 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 IGHV1-69DA0A0B4J2H0 117 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 OR4C45A6NMZ5 311 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 SYNGR1O43759 233 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 IGHV1-69P01742 117 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 APOHP02749 345 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 GABRR1P24046 479 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 EDDM3BP56851 147 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ZNF79Q15937 498 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 DMRTC1Q5HYR2 192 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 DMKNQ6E0U4 476 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 SIGLEC15Q6ZMC9 328 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 TMEM91Q6ZNR0 172 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 VMO1Q7Z5L0 202 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 CALHM1Q8IU99 346 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 SAXO1Q8IYX7 474 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 TMEM86BQ8N661 226 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 C3orf56Q8N813 242 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ZNRF1Q8ND25 227 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 C8orf46Q8TAG6 207 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 SMIM19Q96E16 107 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ELL3Q9HB65 397 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 SPACA1Q9HBV2 294 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ARHGAP32A7KAX9 2087 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 TRAV1-2A0A0B4J238 106 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 hADV38S2A0JD32 116 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 FAM172BPA6NC97 362 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 E5RGE8 158 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 CLDN34H7C241 214 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 SC5DO75845 299 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ARL6IP5O75915 188 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 VENTXO95231 258 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 IL7P13232 177 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 PRKACAP17612 351 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 RBMXP38159 391 aaKnown RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 B2MP61769 119 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 UBA52P62987 128 aaKnown RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 PDZK1IP1Q13113 114 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ASAH1Q13510 395 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 CDK5R1Q15078 307 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 RSU1Q15404 277 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 YIF1BQ5BJH7 314 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 BRD3OSQ6XYD6 125 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 TRAPPC6BQ86SZ2 158 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 CHST4Q8NCG5 386 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 LY6G5BQ8NDX9 201 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 OR13D1Q8NGV5 346 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 TMEM106AQ96A25 262 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 SEH1LQ96EE3 360 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ADAT3Q96EY9 351 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 PGLYRP3Q96LB9 341 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 ZNF488Q96MN9 340 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 NEDD4LQ96PU5 975 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 PDCD1LG2Q9BQ51 273 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 SIRPDQ9H106 197 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 MIXL1Q9H2W2 232 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 HES4Q9HCC6 221 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 FAM212BQ9NTI7 297 aaPredicted RBP5.07□□□□□ -1.6
USP40-202ENST00000409945 COMMD3Q9UBI1 195 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 NSG2Q9Y328 171 aa5.07□□□□□ -1.6
USP40-202ENST00000409945 CENPVL3A0A0U1RRI6 287 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 A0A1B0GUS0 222 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 MEIOCA2RUB1 952 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 PMS2P5A8MQ11 134 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 K7N7A8 449 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 ZNF780AO75290 641 aaPredicted RBP5.06□□□□□ -1.6
USP40-202ENST00000409945 DFFBO76075 338 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 HAND1O96004 215 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 HLA-DQB1P01920 261 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 GLAP06280 429 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 SFTPBP07988 381 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 ZNF44P15621 663 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 TALDO1P37837 337 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 UBE2E1P51965 193 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 MEF2CQ06413 473 aaPredicted RBP5.06□□□□□ -1.6
USP40-202ENST00000409945 GPR176Q14439 515 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 KISS1Q15726 138 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 GRK1Q15835 563 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 KIAA1644Q3SXP7 199 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 PYDC2Q56P42 97 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 KLF17Q5JT82 389 aaPredicted RBP5.06□□□□□ -1.6
USP40-202ENST00000409945 SLC35E4Q6ICL7 350 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 C18orf65Q6ZTR6 163 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 CEACAM19Q7Z692 300 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 GHSRQ92847 366 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 TBX15Q96SF7 602 aa5.06□□□□□ -1.6
USP40-202ENST00000409945 SOSTQ9BQB4 213 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms