RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ARV1Q9H2C2 271 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 C11orf1Q9H5F2 150 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 KCNIP1Q9NZI2 227 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 LPAR3Q9UBY5 353 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 ITPR3Q14573 2671 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 BORCS7-ASMTA0A0B4J1R7 106 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 GPR37O15354 613 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 ZFP36P26651 326 aaKnown RBP11.05□□□□□ -0.64
LIMS1-204ENST00000409441 NKX2-1P43699 371 aaPredicted RBP11.05□□□□□ -0.64
LIMS1-204ENST00000409441 NMSQ5H8A3 153 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 FAM219AQ8IW50 185 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 DMBX1Q8NFW5 382 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 OR1S2Q8NGQ3 325 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 OR1A1Q9P1Q5 309 aa11.05□□□□□ -0.64
LIMS1-204ENST00000409441 MGST3O14880 152 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 SMAD7O15105 426 aaKnown RBP11.04□□□□□ -0.64
LIMS1-204ENST00000409441 HSPA12AO43301 675 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 SULT1A2P50226 295 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 LCN2P80188 198 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 PAX5Q02548 391 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 AESQ08117 197 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 SPNS3Q6ZMD2 512 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 IL34Q6ZMJ4 242 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 SUN5Q8TC36 379 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 IL1F10Q8WWZ1 152 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 C1orf159Q96HA4 380 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 SMIM8Q96KF7 97 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 TOLLIPQ9H0E2 274 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 MMP26Q9NRE1 261 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 MED13LQ71F56 2210 aa11.04□□□□□ -0.64
LIMS1-204ENST00000409441 VPS13CQ709C8 3753 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 LOC105371242A0A075B767 164 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 RNF212BA8MTL3 300 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 KIAA1324LA8MWY0 1029 aaPredicted RBP11.03□□□□□ -0.64
LIMS1-204ENST00000409441 FOXH1O75593 365 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 EDDM3AQ14507 147 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 MSMO1Q15800 293 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 TUSC1Q2TAM9 212 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 TMEM249Q2WGJ8 235 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 TRAT1Q6PIZ9 186 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 ZBTB34Q8NCN2 500 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 H1FXQ92522 213 aaKnown RBP11.03□□□□□ -0.64
LIMS1-204ENST00000409441 SLC25A31Q9H0C2 315 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 LPAR2Q9HBW0 351 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 LIN7CQ9NUP9 197 aaKnown RBP11.03□□□□□ -0.64
LIMS1-204ENST00000409441 OTOGQ6ZRI0 2925 aa11.03□□□□□ -0.64
LIMS1-204ENST00000409441 MALRD1Q5VYJ5 2156 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 A0A1B0GU03 582 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 ZNF705EA8MWA4 302 aaPredicted RBP11.02□□□□□ -0.64
LIMS1-204ENST00000409441 B4DSR2 109 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 SEC11BP0C7V7 166 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 EDDM3BP56851 147 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 ID3Q02535 119 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 KRBOX4Q5JUW0 171 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 TPRX1Q8N7U7 411 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 LSM10Q969L4 123 aaKnown RBP11.02□□□□□ -0.64
LIMS1-204ENST00000409441 COQ2Q96H96 371 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 GINS3Q9BRX5 216 aa11.02□□□□□ -0.64
LIMS1-204ENST00000409441 SERPINE2P07093 398 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 IGHV4-31P0DP07 118 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 GLIPR1P48060 266 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 RPL31P62899 125 aaKnown RBP11.02□□□□□ -0.65
LIMS1-204ENST00000409441 DMRTA1Q5VZB9 504 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 OR2C3Q8N628 320 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 LINC01356Q8N9X3 169 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 GALMQ96C23 342 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 DCTN5Q9BTE1 182 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 PARP11Q9NR21 331 aa11.02□□□□□ -0.65
LIMS1-204ENST00000409441 RPUSD1Q9UJJ7 312 aaKnown RBP11.02□□□□□ -0.65
LIMS1-204ENST00000409441 POLR3KQ9Y2Y1 108 aaPredicted RBP11.02□□□□□ -0.65
LIMS1-204ENST00000409441 RBM7Q9Y580 266 aaKnown RBP11.02□□□□□ -0.65
LIMS1-204ENST00000409441 CREBBPQ92793 2442 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 TRAV39A0A0B4J263 110 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 C22orf46C9J442 243 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 TNFSF12O43508 249 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 IGLV2-14P01704 120 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 MSMBP08118 114 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 CEACAM6P40199 344 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 VAMP2P63027 116 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 EWSR1Q01844 656 aaKnown RBP eCLIP11.01□□□□□ -0.65
LIMS1-204ENST00000409441 PJVKQ0ZLH3 352 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 TMEM200BQ69YZ2 307 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 CYB5R2Q6BCY4 276 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 BPIFCQ8NFQ6 507 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 FAM216AQ8WUB2 273 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 SMIM3Q9BZL3 60 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 C19orf12Q9NSK7 152 aa11.01□□□□□ -0.65
LIMS1-204ENST00000409441 FAM212BQ9NTI7 297 aaPredicted RBP11.01□□□□□ -0.65
LIMS1-204ENST00000409441 LYRM2Q9NU23 88 aaPredicted RBP11.01□□□□□ -0.65
LIMS1-204ENST00000409441 TRBV23-1A0A0A0MS06 115 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 ODAMA1E959 279 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 C12orf77C9JDV5 145 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 PITX3O75364 302 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 MED6O75586 246 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 SCO1O75880 301 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 TGFAP01135 160 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 RAB5CP51148 216 aa11□□□□□ -0.65
LIMS1-204ENST00000409441 POLR2GP62487 172 aaKnown RBP eCLIP11□□□□□ -0.65
LIMS1-204ENST00000409441 PAX2Q02962 417 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 218.3 ms