RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TMEM183BQ1AE95 376 aa11.02□□□□□ -0.65
PTPRN-202ENST00000409251 FAM19A2Q8N3H0 131 aa11.02□□□□□ -0.65
PTPRN-202ENST00000409251 RPP25LQ8N5L8 163 aaKnown RBP11.02□□□□□ -0.65
PTPRN-202ENST00000409251 SIGLECL1Q8N7X8 197 aa11.02□□□□□ -0.65
PTPRN-202ENST00000409251 BEND2Q8NDZ0 799 aa11.02□□□□□ -0.65
PTPRN-202ENST00000409251 RNASE8Q8TDE3 154 aaKnown RBP11.02□□□□□ -0.65
PTPRN-202ENST00000409251 CISD1Q9NZ45 108 aaKnown RBP11.02□□□□□ -0.65
PTPRN-202ENST00000409251 NAPSAO96009 420 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 DCAF10Q5QP82 559 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 CBR3O75828 277 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 MSX1P28360 303 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 OTX1P32242 354 aaPredicted RBP11.01□□□□□ -0.65
PTPRN-202ENST00000409251 ADMP35318 185 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 ATP5G3P48201 142 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 FOXG1P55316 489 aaPredicted RBP11.01□□□□□ -0.65
PTPRN-202ENST00000409251 TCTAP57738 103 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 SUMO1P63165 101 aaKnown RBP11.01□□□□□ -0.65
PTPRN-202ENST00000409251 SRPXP78539 464 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 HTD2P86397 168 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 SSPNQ14714 243 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 PSMF1Q92530 271 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 SLC22A20A6NK97 555 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF732B4DXR9 585 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 PFN1P07737 140 aaKnown RBP11.01□□□□□ -0.65
PTPRN-202ENST00000409251 OR5G3P0C626 314 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 DSCR4P56555 118 aaPredicted RBP11.01□□□□□ -0.65
PTPRN-202ENST00000409251 OR4C5Q8NGB2 326 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 OXGR1Q96P68 337 aa11.01□□□□□ -0.65
PTPRN-202ENST00000409251 RPL36A-HNRNPH2H7BZ11 118 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 LILRA1O75019 489 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 IGKV1D-33P01593 117 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 IGKV1-33P01594 117 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 MGST1P10620 155 aaKnown RBP11□□□□□ -0.65
PTPRN-202ENST00000409251 ARG2P78540 354 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 SPATA46Q5T0L3 261 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 ARFGEF3Q5TH69 2177 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 GCNT2Q8N0V5 402 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 GBGT1Q8N5D6 347 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 TMEM170AQ8WVE7 144 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 ZCCHC14Q8WYQ9 949 aaKnown RBP11□□□□□ -0.65
PTPRN-202ENST00000409251 STARD4Q96DR4 205 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 CDH20Q9HBT6 801 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 OR6C3Q9NZP0 311 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 LOC102723996A0A087X1L8 192 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 KBTBD11O94819 623 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 CCKARP32238 428 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 C1orf194Q5T5A4 169 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 OR5AU1Q8NGC0 362 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 MRPL13Q9BYD1 178 aaKnown RBP11□□□□□ -0.65
PTPRN-202ENST00000409251 OR1A1Q9P1Q5 309 aa11□□□□□ -0.65
PTPRN-202ENST00000409251 TPPP2P59282 170 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 PEAR1Q5VY43 1037 aaPredicted RBP10.99□□□□□ -0.65
PTPRN-202ENST00000409251 AAED1Q7RTV5 226 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 APH1AQ96BI3 265 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 CTDSP1Q9GZU7 261 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 PNRC2Q9NPJ4 139 aaKnown RBP10.99□□□□□ -0.65
PTPRN-202ENST00000409251 DUXBA0A1W2PPF3 345 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 DIRC3C9JPN6 131 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 SH2D1BO14796 132 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 FRMD6-AS1P0C7T7 363 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 CEACAM8P31997 349 aaPredicted RBP10.99□□□□□ -0.65
PTPRN-202ENST00000409251 MAS1LP35410 378 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 TFF3Q07654 80 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 COL5A1-AS1Q5SY13 56 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 CPEB3Q8NE35 698 aaKnown RBP10.99□□□□□ -0.65
PTPRN-202ENST00000409251 ANGPTL4Q9BY76 406 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 TAAR3PQ9P1P4 343 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 FBLN5Q9UBX5 448 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 LOC102725191A0A1B0GVB3 256 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 F6UZH7 168 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 FTH1P19P0C7X4 201 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 SLC25A6P12236 298 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 BRS3P32247 399 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 SPATA45Q537H7 98 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 TRAPPC2LQ9UL33 140 aa10.99□□□□□ -0.65
PTPRN-202ENST00000409251 SNURFLB1AK76 121 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 PGLYRP1O75594 196 aaPredicted RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 G6PCP35575 357 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 LINC00205P59089 165 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 CEACAM16Q2WEN9 425 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 MRPL54Q6P161 138 aaKnown RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 CYP2G1PQ6ZSU1 146 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 NAT8BQ9UHF3 227 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 AQP7P3A6NL99 342 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 TRAPPC2LH3BP13 241 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 M0QZ24 198 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 RND2P52198 227 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 SUMO3P55854 103 aaPredicted RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 FAM53AQ6NSI3 398 aaPredicted RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 SLC25A47Q6Q0C1 308 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 TAF15Q92804 592 aaKnown RBP eCLIP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 ZDHHC16Q969W1 377 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 NEIL1Q96FI4 390 aaPredicted RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 ACY3Q96HD9 319 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF552Q9H707 407 aaPredicted RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 ASCL3Q9NQ33 180 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 ACTL6BO94805 426 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 PAX9P55771 341 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 FXYD3Q14802 87 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 MSMO1Q15800 293 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms