RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 UBTD1Q9HAC8 227 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 YAE1D1Q9NRH1 226 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 IL36BQ9NZH7 164 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 IL17BQ9UHF5 180 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 NPIPB7O75200 414 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 NMUP48645 174 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 HINT1P49773 126 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 NUBP1P53384 320 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 CMC4P56277 68 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF385CQ66K41 422 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 CXorf67Q86X51 503 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 FGFRL1Q8N441 504 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 MAFAQ8NHW3 353 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 C16orf92Q96LL3 132 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 CALYQ9NYX4 217 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SMPXQ9UHP9 88 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 TGIF2-C20orf24A0A0A6YYL0 155 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 NPIPB11E5RHQ5 1161 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 C3orf80F5H4A9 247 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 MPZL1O95297 269 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SMIM10L1P0DMW3 83 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 LOXL3P58215 753 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 PSG4Q00888 419 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 HES3Q5TGS1 186 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 OR1K1Q8NGR3 316 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 GPR146Q96CH1 333 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SCARF2Q96GP6 870 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SMIM10Q96HG1 83 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 PLA2G3Q9NZ20 509 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 PGPA6NDG6 321 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 H3BVH4 76 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 INSL4Q14641 139 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF501Q96CX3 271 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 WDYHV1Q96HA8 205 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 FAM60AQ9NP50 221 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM242Q9NWH2 141 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 MYO10Q9HD67 2058 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 IGHV5-10-1A0A0J9YXX1 117 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 OR2H2O95918 312 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 RRN3P1Q2M238 152 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 PIGYQ3MUY2 71 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 TM4SF20Q53R12 229 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 RASL11AQ6T310 242 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 TTTY12Q9BZ98 90 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 PHLDA3Q9Y5J5 127 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 A0A0G2JLM5 398 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 FOXH1O75593 365 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 UCP1P25874 307 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 GCHFRP30047 84 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SNRPD3P62318 126 aaKnown RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 HIST1H1AQ02539 215 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-203ENST00000409050 CLEC2AQ6UVW9 174 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 SLC25A38Q96DW6 304 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 TCF19Q9Y242 345 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 CROCCQ5TZA2 2017 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 KIF13BQ9NQT8 1826 aa5.25□□□□□ -1.57
SCN1A-203ENST00000409050 A0A1B0GW64 132 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 A8MXK9 166 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 LINC00587B1AMM8 73 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 NANOS3P60323 173 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CX3CL1P78423 397 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 C19orf48Q6RUI8 117 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 PRSS41Q7RTY9 318 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 DEFB123Q8N688 67 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 NUDT10Q8NFP7 164 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CLDND2Q8NHS1 167 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF502Q8TBZ5 544 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CTHRC1Q96CG8 243 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM140Q9NV12 185 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 DLL3Q9NYJ7 618 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF883P0CG24 379 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CCL3P10147 92 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 NUTF2P61970 127 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM177Q53S58 311 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TSPO2Q5TGU0 170 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 C2orf88Q9BSF0 95 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 RAXQ9Y2V3 346 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ADAMTS7Q9UKP4 1686 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 IGHV1-45A0A0A0MS14 117 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 OR4C46A6NHA9 309 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM229AB2RXF0 380 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 SHISA8B8ZZ34 492 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 B9A039 149 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 MAGEA5P43359 124 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CACNG7P62955 275 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ATP5G2Q06055 141 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 C5orf30Q96GV9 206 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF414Q96IQ9 312 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 SGK494Q96LW2 274 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 PCGF1Q9BSM1 259 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 COL9A1P20849 921 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM92Q6UXU6 159 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ATP5L2Q7Z4Y8 100 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 SLC50A1Q9BRV3 221 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CLEC7AQ9BXN2 247 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 PARLQ9H300 379 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 GEMIN7Q9H840 131 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 SPANXCQ9NY87 97 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 ITGB4P16144 1822 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 RBMY1BA6NDE4 496 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms