RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CCDC144NLQ6NUI1 221 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 IL17RELQ6ZVW7 336 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 CAPSLQ8WWF8 208 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 TMEM230Q96A57 120 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 IGHV1-3A0A0C4DH29 117 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 LINC00473A8K010 186 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 FSHBP01225 129 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 PAX6P26367 422 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 MECP2P51608 486 aaKnown RBP14.61□□□□□ -0.07
SDC1-203ENST00000403076 ARHGDIBP52566 201 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 RAG2P55895 527 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 RPL30P62888 115 aaKnown RBP14.61□□□□□ -0.07
SDC1-203ENST00000403076 OR2B11Q5JQS5 317 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 NABP2Q9BQ15 211 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 NAA60Q9H7X0 242 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 LIN7CQ9NUP9 197 aaKnown RBP14.61□□□□□ -0.07
SDC1-203ENST00000403076 A0A0U1RQK1 487 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 C3orf85A0A1B0GTC6 90 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 CRYM-AS1A6NIL9 109 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 APOA2P02652 100 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 OR4E1P0C645 316 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 VSIG10L2P0DP72 767 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 F2RP25116 425 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 UBE2MP61081 183 aaKnown RBP14.6□□□□□ -0.07
SDC1-203ENST00000403076 PPP1R1AQ13522 171 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 EIF4EBP1Q13541 118 aaPredicted RBP14.6□□□□□ -0.07
SDC1-203ENST00000403076 OR8H3Q8N146 312 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 DYNAPQ8N1N2 210 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 ZNF383Q8NA42 475 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 C22orf15Q8WYQ4 148 aa14.6□□□□□ -0.07
SDC1-203ENST00000403076 ALX4Q9H161 411 aaPredicted RBP14.6□□□□□ -0.07
SDC1-203ENST00000403076 SOX21Q9Y651 276 aaPredicted RBP14.6□□□□□ -0.07
SDC1-203ENST00000403076 AKAP9Q99996 3911 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 IGHV3-72A0A0B4J1Y9 119 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 H7C2Y5 167 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 FBP1P09467 338 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 ANXA3P12429 323 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 SLC9A3R2Q15599 337 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 SP6Q3SY56 376 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 CASTOR1Q8WTX7 329 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 AJUBAQ96IF1 538 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 SLC35D1Q9NTN3 355 aa14.59□□□□□ -0.07
SDC1-203ENST00000403076 TIMM23O14925 209 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 PRAF2O60831 178 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 FCGR3BO75015 233 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 HLA-AP01891 365 aaKnown RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 OR5AC1P0C628 307 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 TAGLNQ01995 201 aaKnown RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 DHODHQ02127 395 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 CBX3Q13185 183 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 RTL8BQ17RB0 113 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 Q71RC1 249 aaPredicted RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 SPAG16Q8N0X2 631 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 BCL6BQ8N143 479 aaPredicted RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 SEC22CQ9BRL7 303 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 GSX1Q9H4S2 264 aaPredicted RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 GPN1Q9HCN4 374 aaPredicted RBP14.58□□□□□ -0.08
SDC1-203ENST00000403076 TMEM160Q9NX00 188 aa14.58□□□□□ -0.08
SDC1-203ENST00000403076 A0A1W2PPI3 338 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 C9orf170A2RU37 121 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 SFT2D2O95562 160 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 IFNA2P01563 188 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 IL5P05113 134 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 SERPINE2P07093 398 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 BRS3P32247 399 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 MC5RP33032 325 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 KIR2DS2P43631 304 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 SUPT4H1P63272 117 aaKnown RBP14.57□□□□□ -0.08
SDC1-203ENST00000403076 LYG2Q86SG7 212 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 TCTEX1D1Q8N7M0 179 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 TP53RKQ96S44 253 aa14.57□□□□□ -0.08
SDC1-203ENST00000403076 H0Y980 276 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 H0YJW9 148 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 B3GALNT1O75752 331 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 RRASP10301 218 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 LPAR6P43657 344 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 DHRS2Q13268 280 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 OR5AN1Q8NGI8 311 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 OR52B4Q8NGK2 314 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 CD300LFQ8TDQ1 290 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 DDB2Q92466 427 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 GALNT14Q96FL9 552 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 WASHC3Q9Y3C0 194 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 RAB13P51153 203 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 HES1Q14469 280 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 TATDN3Q17R31 274 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 OR4S2Q8NH73 311 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 ZDHHC16Q969W1 377 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 TMEM222Q9H0R3 208 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 MEGF9Q9H1U4 602 aa14.56□□□□□ -0.08
SDC1-203ENST00000403076 SONP18583 2426 aaKnown RBP14.55□□□□□ -0.08
SDC1-203ENST00000403076 HIVEP2P31629 2446 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 RAMP3O60896 148 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 CRYZL1O95825 349 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 CD1BP29016 333 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 DEFB112Q30KQ8 113 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 C9orf139Q6ZV77 190 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 ZNF431Q8TF32 576 aaPredicted RBP14.55□□□□□ -0.08
SDC1-203ENST00000403076 GLYATL2Q8WU03 294 aa14.55□□□□□ -0.08
SDC1-203ENST00000403076 PRR13Q9NZ81 148 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms